View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0400_low_10 (Length: 251)

Name: NF0400_low_10
Description: NF0400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0400_low_10
NF0400_low_10
[»] chr4 (6 HSPs)
chr4 (19-251)||(16254895-16255127)
chr4 (19-251)||(6693880-6694112)
chr4 (19-251)||(17151035-17151267)
chr4 (34-251)||(520375-520592)
chr4 (19-251)||(7844905-7845137)
chr4 (157-245)||(26813600-26813688)
[»] chr8 (8 HSPs)
chr8 (19-251)||(14892199-14892431)
chr8 (19-251)||(21211417-21211649)
chr8 (21-251)||(22832401-22832631)
chr8 (157-244)||(18234027-18234114)
chr8 (157-244)||(18243478-18243565)
chr8 (87-244)||(33600415-33600572)
chr8 (157-251)||(25035933-25036027)
chr8 (157-251)||(25049970-25050064)
[»] scaffold0611 (1 HSPs)
scaffold0611 (21-230)||(1-210)
[»] chr2 (5 HSPs)
chr2 (19-251)||(45016015-45016247)
chr2 (19-251)||(9512211-9512443)
chr2 (19-251)||(18652880-18653112)
chr2 (34-251)||(27168448-27168665)
chr2 (19-245)||(22903807-22904033)
[»] chr7 (13 HSPs)
chr7 (19-251)||(6536146-6536378)
chr7 (19-251)||(9543687-9543919)
chr7 (19-251)||(5389618-5389850)
chr7 (19-251)||(8502711-8502943)
chr7 (19-251)||(26305218-26305450)
chr7 (19-251)||(26361368-26361600)
chr7 (19-251)||(32100042-32100274)
chr7 (19-251)||(44898961-44899193)
chr7 (19-251)||(16140631-16140863)
chr7 (19-251)||(46498776-46499008)
chr7 (34-251)||(42597020-42597237)
chr7 (19-245)||(13283877-13284103)
chr7 (71-244)||(14643279-14643452)
[»] chr5 (9 HSPs)
chr5 (19-251)||(27413810-27414042)
chr5 (19-251)||(26200772-26201004)
chr5 (19-251)||(33940982-33941214)
chr5 (19-251)||(18362939-18363171)
chr5 (34-251)||(20949517-20949734)
chr5 (35-251)||(23375368-23375576)
chr5 (87-251)||(22456358-22456522)
chr5 (71-244)||(20037353-20037526)
chr5 (157-244)||(24299175-24299262)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-251)||(148370-148602)
[»] chr6 (8 HSPs)
chr6 (19-251)||(31359223-31359455)
chr6 (19-251)||(16899608-16899840)
chr6 (19-251)||(18161727-18161959)
chr6 (34-251)||(34767018-34767235)
chr6 (19-251)||(18704490-18704722)
chr6 (19-251)||(18710425-18710657)
chr6 (19-217)||(29561122-29561320)
chr6 (157-244)||(25895804-25895891)
[»] chr3 (4 HSPs)
chr3 (19-251)||(6423969-6424201)
chr3 (19-251)||(9538797-9539029)
chr3 (19-251)||(8974508-8974740)
chr3 (98-251)||(12387649-12387802)
[»] scaffold0058 (1 HSPs)
scaffold0058 (19-251)||(52979-53209)
[»] scaffold0313 (2 HSPs)
scaffold0313 (34-251)||(7431-7648)
scaffold0313 (34-251)||(11213-11430)
[»] scaffold0254 (1 HSPs)
scaffold0254 (34-251)||(6030-6247)
[»] chr1 (3 HSPs)
chr1 (19-251)||(16156545-16156777)
chr1 (34-251)||(1987651-1987868)
chr1 (49-245)||(22959995-22960190)
[»] scaffold0016 (1 HSPs)
scaffold0016 (35-251)||(16889-17097)
[»] scaffold0141 (2 HSPs)
scaffold0141 (19-188)||(27670-27839)
scaffold0141 (182-251)||(20437-20506)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-188)||(86973-87142)
[»] scaffold0015 (1 HSPs)
scaffold0015 (49-245)||(189005-189200)
[»] scaffold0529 (1 HSPs)
scaffold0529 (148-251)||(187-290)
[»] scaffold0010 (1 HSPs)
scaffold0010 (157-244)||(258166-258253)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 16255127 - 16254895
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16255127 acatcatcatcagcaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 16255028  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||     
T  16255027 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctaagtaattacagtgaccataggtctccacatacttggaagacatct 16254928  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    |||||||||||||||||||||||||||||||||    
T  16254927 caatatttttctgattctatcatgagtagaata 16254895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6694112 - 6693880
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6694112 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 6694013  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  6694012 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 6693913  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  6693912 cagaatttttctaattctatcatgagtggaata 6693880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 17151267 - 17151035
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17151267 acatcatcatcagctactgatgaggtttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 17151168  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||     
T  17151167 ctcttagtgaaccaatgagatcttccaggttcatagattataaatctttggcctgagtaattgcattgaccataggtctccaaacacttggaagacatct 17151068  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     ||||||||||| |||| | |||||||||||||    
T  17151067 taatatttttctaattcaaacatgagtagaata 17151035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 520375 - 520592
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  520375 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 520474  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  520475 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 520574  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  520575 tctctcatgagtggaata 520592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 7844905 - 7845137
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7844905 acatcatcatcagctactaatgagctttgttgagatgctttcaatgcaagtgtctttaccttcttcactggtttgtctccttgaagtacaacttcatgag 7845004  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||     
T  7845005 ctctcaatgagccaatgagatcttctagattcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccatacacttggaagacatct 7845104  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     |||||||||||||||||||||| |||||||||    
T  7845105 taatatttttctgattctatcataagtagaata 7845137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 26813688 - 26813600
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagt 245  Q
    ||||| ||||| || || || |||||||| ||||| ||||||||  | |||||||||||||  || |||||||| |||| |||||||||    
T  26813688 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaaaatttttcttattcgatcatgagt 26813600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 14892199 - 14892431
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14892199 acatcatcatcagctactgatgagctttgctgagatgctttcaaggcaagtgttttcaccttcttcactggtttgtctccttgaagtacaacttcatgag 14892298  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||     
T  14892299 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatcttctgcctgagtaattgcagtgaccataggtctccacatacttggaagacatct 14892398  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    |||||||||||| ||||||||||||||||||||    
T  14892399 caatatttttctaattctatcatgagtagaata 14892431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 21211417 - 21211649
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21211417 acatcttcatcatcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 21211516  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  21211517 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 21211616  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  21211617 cagaatttttctaattctatcatgagtggaata 21211649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 22832631 - 22832401
Alignment:
Q  21 atcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagct 120  Q
    |||||||||| | ||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  22832631 atcatcatcagctactgatgaggtttgctgagaggctttcaaggcaagtgattttaccttcttcactggtttgtctccttgaagtactacttcaggagct 22832532  T
Q  121 ctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcaca 220  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |     
T  22832531 ctcagtgaaccaatgagatcttcaaggttcatagatttcaaatctttggcctgagtgattgcagtgacgataggtctccacataattggaagacatctcg 22832432  T
Q  221 atatttttctgattctatcatgagtagaata 251  Q
      || |||| |||||| |||||||| |||||    
T  22832431 gaatctttccgattctttcatgagtggaata 22832401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 18234114 - 18234027
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  || |||| |||||||  ||||||||||||||||| |||||||    
T  18234114 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgag 18234027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 18243565 - 18243478
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  || |||| |||||||  ||||||||||||||||| |||||||    
T  18243565 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgag 18243478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 33600415 - 33600572
Alignment:
Q  87 tggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtg 186  Q
    |||||||||| ||||||| | ||||||||| ||||| ||||  |||||||||||||| |    ||  || ||||| |||||||  ||||| ||||| ||     
T  33600415 tggtttgtcttcttgaagcaaaacttcatgggctcttagtgttccaatgagatcttctaaagccaaggaatttaagtctttggattgagtgattgctgta 33600514  T
Q  187 accataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    |||||||||||||| ||  | ||||||||||  |  |||||||||||||| |||||||    
T  33600515 accataggtctccatattttaggaagacatctgaggatttttctgattctgtcatgag 33600572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 25035933 - 25036027
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagtagaata 251  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  |  |||| | |||||  ||||||||||||||||| ||||||| ||||||    
T  25035933 tttaagtctttggcttgagtgattgccgtaaccataggtctccatgtgtttgggaaacatcttaatatttttctgattctgtcatgaggagaata 25036027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 25049970 - 25050064
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagtagaata 251  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  |  |||| | |||||  ||||||||||||||||| ||||||| ||||||    
T  25049970 tttaagtctttggcttgagtgattgccgtaaccataggtctccatgtgtttgggaaacatcttaatatttttctgattctgtcatgaggagaata 25050064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 210 - 1
Alignment:
Q  21 atcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagct 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  210 atcatcatcagcaactgatgaactttgctgagatgctttcaaggaaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagct 111  T
Q  121 ctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||    
T  110 ctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctaagtaattgcagtgaccataggtctccaaatacttggaagacatctca 11  T
Q  221 atatttttct 230  Q
    ||||||||||    
T  10 atatttttct 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 45016247 - 45016015
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| |||||||||| |||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45016247 acatcatcatcagcaactgatgagcttgactgagatgcttttaaggcaagtgtttttaccttctttactggtttgtctccttgaagtacaacttcatgag 45016148  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  45016147 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 45016048  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    || ||||||||| ||||||||||||||||||||    
T  45016047 cagtatttttctaattctatcatgagtagaata 45016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 9512211 - 9512443
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  9512211 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttctttactggtttgtctccttgaagtacaacttcatgag 9512310  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  9512311 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 9512410  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  9512411 cagaatttttctaattctatcatgagtggaata 9512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 18653112 - 18652880
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  18653112 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttctttactggtttgtctccttgaagtacaacttcatgag 18653013  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  18653012 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 18652913  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  18652912 cagaatttttctaattctatcatgagtggaata 18652880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 27168448 - 27168665
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27168448 actgatgaggtttgctgagaggctttcaaggcaagtgactttactttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 27168547  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27168548 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 27168647  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  27168648 tctctcatgagtggaata 27168665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 22904033 - 22903807
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||| ||| | ||||||||  |||||||||| ||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22904033 acatcatcttcagctactgatgaggtttgctgagaggcttttaaggcaagtgactttaccttcttcattggtttgtctccttgaagtacaacttcatgag 22903934  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |     
T  22903933 ctctcagtgaaccaatgagatcttccaagttcatagatttcaaatctttggcctgagtaattgcagttaccataggtctccacatacttggaaggcaact 22903834  T
Q  219 caatatttttctgattctatcatgagt 245  Q
    |||||||||||||||| | ||||||||    
T  22903833 caatatttttctgattatctcatgagt 22903807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6536378 - 6536146
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6536378 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 6536279  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  6536278 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 6536179  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  6536178 cagaatttttctaattctatcatgagtggaata 6536146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 9543687 - 9543919
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||| ||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9543687 acatcatcttcagcagctgatgagctttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 9543786  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||     
T  9543787 ctctcagtgaaccaataagatcttccaggttcatagattttaaatctttggcctgggtgattgcagtgaccataggtctccacatacttggaagacatct 9543886  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     | ||||||||| ||||||||||||||||||||    
T  9543887 tagtatttttctaattctatcatgagtagaata 9543919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5389618 - 5389850
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5389618 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 5389717  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  5389718 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 5389817  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  5389818 cagaatttttctaattctatcatgagtggaata 5389850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8502943 - 8502711
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8502943 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttctttactggtttgtctccttgaagtacaacttcatgag 8502844  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  8502843 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 8502744  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  8502743 cagaatttttctaattctatcatgagtggaata 8502711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 26305450 - 26305218
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26305450 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 26305351  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  26305350 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 26305251  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  26305250 cagaatttttctaattctatcatgagtggaata 26305218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 26361368 - 26361600
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26361368 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 26361467  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  26361468 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 26361567  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  26361568 cagaatttttctaattctatcatgagtggaata 26361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 32100274 - 32100042
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32100274 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 32100175  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  32100174 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 32100075  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  32100074 cagaatttttctaattctatcatgagtggaata 32100042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 44899193 - 44898961
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  44899193 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttctttactggtttgtctccttgaagtacaacttcatgag 44899094  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  44899093 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 44898994  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  44898993 cagaatttttctaattctatcatgagtggaata 44898961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 16140631 - 16140863
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16140631 acatcttcatcagcaactgatggggtttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 16140730  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  16140731 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 16140830  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  16140831 cagaatttttctaattctatcatgagtggaata 16140863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 46499008 - 46498776
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46499008 acatcttcatcagcaactgatggagtttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttaaagtacaacttcatgag 46498909  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  46498908 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 46498809  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  46498808 cagaatttttctaattctatcatgagtggaata 46498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 42597237 - 42597020
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||| ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42597237 actgatgaggtttgttgagaggctttcaaggcaagtgactttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaacaaa 42597138  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  42597137 tgagatcttccaggttcatagatttcaaatctttggcctcagtgattgcagtgaccataggtctctacatacttggaaggcatctcaatatttttctgat 42597038  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  42597037 tctctcatgagtggaata 42597020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 13283877 - 13284103
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||||||||||   ||||||||| ||| |||||| ||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  13283877 acatcatcatcagttactgatgaagtttactgagaggctttcaaggcaagtgactttaccttctttactagtttgtctccttgaagtacaacttcatgag 13283976  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||     
T  13283977 ctctaagtgaaccaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgaagtgaccataggtctccacatacttggaaggcatct 13284076  T
Q  219 caatatttttctgattctatcatgagt 245  Q
     ||||||||||||||||| ||||||||    
T  13284077 taatatttttctgattctctcatgagt 13284103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 14643279 - 14643452
Alignment:
Q  71 tttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggc 170  Q
    ||||| |||| ||||| ||||| ||| |||| |||| || |||||||||||| || |  ||||| ||||| || |||  ||  || |||| |||||||||    
T  14643279 tttttccctttttcaccggtttatcttcttggagtagaatttcatgagctctaagcgttccaataagatcctctagggccaaggaatttagatctttggc 14643378  T
Q  171 ctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
     ||||| ||||| || ||||||||||||||  |  |||| |||||||  ||||||||||| ||||| |||||||    
T  14643379 ttgagtgattgctgtaaccataggtctccatgtgtttgggagacatcttaatatttttctaattctgtcatgag 14643452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 27414042 - 27413810
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27414042 acatcttcatcagcaactgatggggtttgctgagatgctttcaaagcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 27413943  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  27413942 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 27413843  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    || ||||||||| ||||||||||||||||||||    
T  27413842 cagtatttttctaattctatcatgagtagaata 27413810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 26200772 - 26201004
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26200772 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 26200871  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  26200872 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 26200971  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  26200972 cagaatttttctaattctatcatgagtggaata 26201004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 33941214 - 33940982
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  33941214 acatcttcatcagcaactgatgaggtttgctgagatgctttcaaggcaagtgttcttaccttctttactggtttgtctccttgaagtacaacttcatgag 33941115  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  33941114 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 33941015  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  33941014 cagaatttttctaattctatcatgagtggaata 33940982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 18363171 - 18362939
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18363171 acatcttcatcagcaactgatggggtttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 18363072  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  18363071 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 18362972  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  18362971 cagaatttttctaattctatcatgagtggaata 18362939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 20949734 - 20949517
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20949734 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 20949635  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20949634 tgagatcttccaggttcatagatttcaaatccttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 20949535  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  20949534 tctctcatgagtggaata 20949517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 23375368 - 23375576
Alignment:
Q  35 ctgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaat 134  Q
    |||||||| |||| |||||||||||||||| ||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23375368 ctgatgaagtttgttgagatgctttcaaggaaagtgattttacctttttcactggtttgtctttttgaagtacaacttcatgagctctcagtgaaccaat 23375467  T
Q  135 gagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgatt 234  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||     |||| ||||||||||||||||    
T  23375468 gagatcttcaaggttcatagattttaaatctttggcctgagtaattgca---tccataggtctccacatacttg-----catctcaatatttttctgatt 23375559  T
Q  235 ctatcatgagtagaata 251  Q
    || |||||||| |||||    
T  23375560 ctttcatgagtggaata 23375576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 22456358 - 22456522
Alignment:
Q  87 tggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtg 186  Q
    |||||||||| ||||||| | ||||||||||||||| ||||  |||||||||||||| |    ||  || |||||||||||||| ||||| ||| | ||     
T  22456358 tggtttgtcttcttgaagcaaaacttcatgagctcttagtgttccaatgagatcttctaaagccaaggaatttaaatctttggcttgagtgatttctgta 22456457  T
Q  187 accataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagtagaata 251  Q
    |||||||||||||| ||| | ||||||||||  ||||||||||||||||| ||||||| ||||||    
T  22456458 accataggtctccatatattaggaagacatcttaatatttttctgattctgtcatgaggagaata 22456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 20037526 - 20037353
Alignment:
Q  71 tttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggc 170  Q
    ||||| |||| ||||| ||||| ||| |||| |||| ||||||||||||||| ||||  |||||||||| ||| |    ||  || |||| ||| |||||    
T  20037526 tttttccctttttcaccggtttatcttcttggagtagaacttcatgagctctaagtgttccaatgagattttctaaagccaaggaatttagatcgttggc 20037427  T
Q  171 ctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
     ||||| ||||  || ||||||||||||||| |  |||| |||||||  ||||||||||||||||| |||||||    
T  20037426 ttgagtgattgttgtaaccataggtctccacgtgtttgggagacatcttaatatttttctgattctgtcatgag 20037353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 24299175 - 24299262
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  || |||| |||||||  ||||||||||||||||| |||||||    
T  24299175 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgag 24299262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 148602 - 148370
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  148602 acatcatcatcagctactgatgagctttgctgagatgctttcaaggtaagtgtttttactttcttcactggtttgtctccttgaagtacaacgtcatgag 148503  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  148502 ctctcagtgaaccaatgagatcctctaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 148403  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     ||||||||||||||||||||||||||| ||||    
T  148402 taatatttttctgattctatcatgagtataata 148370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 31359455 - 31359223
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31359455 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 31359356  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  31359355 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 31359256  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  31359255 cagaatttttctaattctatcatgagtggaata 31359223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 16899840 - 16899608
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899840 acatcttcatcagcaactgatggggtttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 16899741  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  16899740 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 16899641  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  16899640 cagaatttttctaattctatcatgagttgaata 16899608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 18161959 - 18161727
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18161959 acatcttcatcagcaactgatggggtttgctgagatgcttttaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 18161860  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  18161859 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 18161760  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  18161759 cagaatttttctaattctatcatgagtggaata 18161727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 34767235 - 34767018
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34767235 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 34767136  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34767135 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 34767036  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  34767035 tctctcatgagtggaata 34767018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 18704490 - 18704722
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||| ||||  |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18704490 acatcatcatcagctacttatgaggtttgctgagaagctttcaaggcaagtgattttaccttcttcactgggttgtctccttgaagtacaactgcatgag 18704589  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18704590 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatct 18704689  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     |  || ||||||||||| |||||||| |||||    
T  18704690 tagaatctttctgattctctcatgagtggaata 18704722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 18710425 - 18710657
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||| ||||  |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18710425 acatcatcatcagctacttatgaggtttgctgagaagctttcaaggcaagtgattttaccttcttcactgggttgtctccttgaagtacaactgcatgag 18710524  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18710525 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatct 18710624  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
     |  || ||||||||||| |||||||| |||||    
T  18710625 tagaatctttctgattctctcatgagtggaata 18710657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 29561320 - 29561122
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  29561320 acatcatcatcagctactgatgaggtttgctgagatgctttcaaagcaagtgtttttacattcttcactggtttatctccttgaagtacgacttcatgag 29561221  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatc 217  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  ||||||||| |||  |||| ||||| ||||||||    
T  29561220 ctcttagtgaaccaatgagatctttcaggttcatagattttaaatctttggcctaagtaattgttgtgaccatatgtcctcacacacttgaaagacatc 29561122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 25895891 - 25895804
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  || |||| |||||||  ||||||||||||||||| |||||||    
T  25895891 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgag 25895804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6424201 - 6423969
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424201 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 6424102  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |     
T  6424101 ctcttagtgaaccaatgagatcttccaggtttatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacacct 6424002  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    || ||||||||| ||||||||||||||||||||    
T  6424001 cagtatttttctaattctatcatgagtagaata 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 9539029 - 9538797
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9539029 acatcttcatcagcaactgatggggtttgctgagatgctttcaaggcaagtgttcttaccttcttcactggtttgtctccttgaagtacaacttcatgag 9538930  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  9538929 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatct 9538830  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  9538829 cagaatttttctaattctatcatgagtggaata 9538797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8974740 - 8974508
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8974740 acatcttcatcagcaactgatggggtttgctgagatgcttttaaggcaagtgtctttaccttcttcactggtttgtctccttgaagtacaacttcatgag 8974641  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  8974640 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 8974541  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    ||  |||||||| |||||||||||||| |||||    
T  8974540 cagaatttttctaattctatcatgagtggaata 8974508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 12387802 - 12387649
Alignment:
Q  98 cttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtct 197  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||| ||||| ||| |||||||||||||||||||||||||||||    
T  12387802 cttgaagtacaacttcatgagctatcagtgaatcaatgagatcttccaagttcatatattgtaaatatttagcctgagtaattgcagtgaccataggtct 12387703  T
Q  198 ccacatacttggaagacatcacaatatttttctgattctatcatgagtagaata 251  Q
     | |||||||||||| |||| |||||||||||||| ||| |||| ||| |||||    
T  12387702 tcgcatacttggaaggcatctcaatatttttctgactctctcataagtggaata 12387649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 52979 - 53209
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  52979 acatcatcatcagctactgatgagctttgatgagatgctttcaaggcaagtgttttcaccttcttcactagtttgtctccttgaagtataacttcatgag 53078  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  53079 ctctcagtgatccaatgagatcttcgaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccatatacttggaagacatct 53178  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    |  ||||||||||||||||||||||||||||||    
T  53179 c--tatttttctgattctatcatgagtagaata 53209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 7648 - 7431
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7648 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 7549  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7548 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 7449  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  7448 tctctcatgagtggaata 7431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 11430 - 11213
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11430 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 11331  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11330 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 11231  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  11230 tctctcatgagtggaata 11213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 6030 - 6247
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030 actgatgaggtttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 6129  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6130 tgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatatttttctgat 6229  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  6230 tctctcatgagtggaata 6247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 16156777 - 16156545
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    ||||| |||||| |||||||||   ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16156777 acatcttcatcagcaactgatggggtttgctgagatgctttcaaagcaggtgtttttaccttcttcactggtttgtctcgttgaagtacaacttcatgag 16156678  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatca 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||     
T  16156677 ctcttagtgaaccaatgagatcttccaggttcatagattttaaatcttttgcctgagtgattgcagtgaccataggtctccacacacttggaagacatct 16156578  T
Q  219 caatatttttctgattctatcatgagtagaata 251  Q
    || ||||||||| ||| ||||||||||||||||    
T  16156577 cagtatttttctaattttatcatgagtagaata 16156545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 1987651 - 1987868
Alignment:
Q  34 actgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaa 133  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1987651 actgatgagatttgctgagaggctttcaaggcaagtgactttaccttctttactggtttgtctccttgaagtacaacttcatgagctcttagtgaaccaa 1987750  T
Q  134 tgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgat 233  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  1987751 tgagatcttccagattcatagatttcaaatctttggcctgagtgatttcagtgaccataggtctccacatacttggaagtcatctcaatatttttctgat 1987850  T
Q  234 tctatcatgagtagaata 251  Q
    ||| |||||||| |||||    
T  1987851 tctctcatgagtggaata 1987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 22960190 - 22959995
Alignment:
Q  49 tgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggt 148  Q
    ||||| ||||| |||| ||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||||||| |||| |||||||       
T  22960190 tgagaagcttttaaggtaagtgattttaccttcctcactggtttatctccttaaagtataacttcatgagctcttagtgaacca-tgagttcttccaaag 22960092  T
Q  149 tcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagt 245  Q
    ||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  | ||| || |||||||||||||||||    
T  22960091 tcaaagagtttaaatctttggcttgagtaattgcagtgaccataggtctccatatacttggaagacatcttagtatcttcctgattctatcatgagt 22959995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 17097 - 16889
Alignment:
Q  35 ctgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaat 134  Q
    |||||||| |||| |||||||||||||||| ||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  17097 ctgatgaagtttgttgagatgctttcaaggaaagtgattttacctttttcactggtttgtctttttgaagtacaacttcatgagctctcagtgaaccaat 16998  T
Q  135 gagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgatt 234  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||     |||| ||||||||||||||||    
T  16997 gagatcttcaaggttcatagattttaaatctttggcctgagtaattgca---tccataggtctccacatacttg-----catctcaatatttttctgatt 16906  T
Q  235 ctatcatgagtagaata 251  Q
    || |||||||| |||||    
T  16905 ctttcatgagtggaata 16889  T

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Target: scaffold0141 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 27839 - 27670
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||||||||  |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27839 acatcatcatcagctactgatgaggtttgctgagaagctttcaaggcaagtgattttaccttcttcactggtttgtctccttgaagtataacttcatgag 27740  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgac 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  27739 ctctcaatgaaccaatgagatcttccaggttcatagattttaaatctttgatctgagtaattgtagtgac 27670  T

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Target: scaffold0141; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 20506 - 20437
Alignment:
Q  182 cagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagtagaata 251  Q
    |||||||||||||||||||||| |||||||||||||  |  || ||||||||||| |||||||| |||||    
T  20506 cagtgaccataggtctccacattcttggaagacatcttagaatctttctgattctctcatgagtggaata 20437  T

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Target: scaffold0049 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 86973 - 87142
Alignment:
Q  19 acatcatcatcaacaactgatgaactttgctgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgag 118  Q
    |||||||||||| | ||||||||  |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  86973 acatcatcatcagctactgatgaggtttgctgagaagctttcaaggcaagtgattttaccttcttcactggtttgtctccttgaagtataacttcatgag 87072  T
Q  119 ctctcagtgaaccaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgac 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  87073 ctctcaatgaaccaatgagatcttccaggttcatagattttaaatctttgatctgagtaattgtagtgac 87142  T

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Target: scaffold0015 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 189005 - 189200
Alignment:
Q  49 tgagatgctttcaaggcaagtgtttttaccttcttcactggtttgtctccttgaagtacaacttcatgagctctcagtgaaccaatgagatcttccaggt 148  Q
    ||||| ||||| |||||||||| |||||||||  ||| |||||| ||||||| ||||| ||||||||||||||| ||||||||| ||||  ||||||       
T  189005 tgagaagcttttaaggcaagtgattttacctttctcattggtttatctccttaaagtataacttcatgagctcttagtgaacca-tgagtacttccaaag 189103  T
Q  149 tcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagt 245  Q
    ||| ||| |||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||  | ||| || || ||||||||||||||    
T  189104 tcaaagagtttaaatctttggcttgagtaattgcagtgaccataggcctccatgtacttggaagacatcttagtatcttcctaattctatcatgagt 189200  T

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Target: scaffold0529 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 290 - 187
Alignment:
Q  148 ttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgagtag 247  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||| |    
T  290 ttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcattatttttcttattctttcatgagtgg 191  T
Q  248 aata 251  Q
    ||||    
T  190 aata 187  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 258253 - 258166
Alignment:
Q  157 tttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcacaatatttttctgattctatcatgag 244  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||  |  |||| |||||||  ||||||||||||||||| |||||||    
T  258253 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtttttgggagacatcttaatatttttctgattctgtcatgag 258166  T

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