View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0400_low_2 (Length: 460)

Name: NF0400_low_2
Description: NF0400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0400_low_2
NF0400_low_2
[»] chr4 (34 HSPs)
chr4 (74-258)||(56505690-56505874)
chr4 (82-263)||(36095809-36095989)
chr4 (82-252)||(50679305-50679475)
chr4 (149-266)||(9023628-9023745)
chr4 (82-255)||(36096356-36096529)
chr4 (149-257)||(39744413-39744521)
chr4 (82-258)||(50678776-50678951)
chr4 (149-266)||(293165-293282)
chr4 (149-261)||(9380689-9380801)
chr4 (149-257)||(28196344-28196452)
chr4 (149-252)||(4239314-4239417)
chr4 (149-252)||(28196721-28196824)
chr4 (149-252)||(32703598-32703701)
chr4 (150-252)||(25161881-25161983)
chr4 (74-256)||(43050606-43050788)
chr4 (98-258)||(56506471-56506631)
chr4 (149-252)||(169387-169490)
chr4 (149-256)||(12757766-12757872)
chr4 (83-234)||(43051134-43051285)
chr4 (149-252)||(43292040-43292143)
chr4 (149-234)||(25162261-25162346)
chr4 (149-234)||(44468871-44468956)
chr4 (203-263)||(24775785-24775845)
chr4 (82-234)||(45830079-45830229)
chr4 (149-252)||(23540200-23540303)
chr4 (149-232)||(39086571-39086654)
chr4 (149-255)||(48406333-48406438)
chr4 (149-234)||(169035-169120)
chr4 (149-257)||(9023242-9023350)
chr4 (82-123)||(11529300-11529341)
chr4 (82-123)||(45829125-45829166)
chr4 (82-123)||(47219086-47219127)
chr4 (203-263)||(13198908-13198968)
chr4 (207-254)||(24775642-24775690)
[»] chr8 (34 HSPs)
chr8 (82-257)||(13026633-13026808)
chr8 (258-321)||(43591794-43591857)
chr8 (149-266)||(34498111-34498227)
chr8 (74-252)||(9822751-9822929)
chr8 (82-252)||(9823242-9823412)
chr8 (82-255)||(13027163-13027335)
chr8 (82-252)||(22851393-22851563)
chr8 (62-233)||(39723424-39723597)
chr8 (82-252)||(39723929-39724099)
chr8 (149-252)||(17431290-17431393)
chr8 (149-264)||(37396699-37396814)
chr8 (149-252)||(24473346-24473449)
chr8 (146-252)||(13936726-13936830)
chr8 (149-234)||(6092796-6092881)
chr8 (146-258)||(13937334-13937446)
chr8 (149-257)||(15042143-15042251)
chr8 (149-252)||(20861586-20861689)
chr8 (177-256)||(25439102-25439180)
chr8 (149-252)||(41662524-41662627)
chr8 (148-234)||(3307359-3307445)
chr8 (149-222)||(6198691-6198764)
chr8 (161-266)||(15442752-15442857)
chr8 (149-234)||(24473716-24473801)
chr8 (149-257)||(15444595-15444703)
chr8 (149-221)||(33727053-33727125)
chr8 (149-252)||(41662350-41662454)
chr8 (73-108)||(6092903-6092938)
chr8 (164-263)||(12281116-12281215)
chr8 (203-252)||(15156187-15156236)
chr8 (203-252)||(23123341-23123390)
chr8 (191-252)||(25438795-25438856)
chr8 (149-233)||(9623524-9623608)
chr8 (149-257)||(34498503-34498611)
chr8 (149-252)||(43245874-43245978)
[»] chr5 (32 HSPs)
chr5 (82-265)||(18817492-18817675)
chr5 (82-257)||(11351310-11351483)
chr5 (82-234)||(18816973-18817125)
chr5 (149-257)||(43464140-43464247)
chr5 (149-256)||(3888610-3888717)
chr5 (149-252)||(34147458-34147561)
chr5 (149-266)||(12498876-12498993)
chr5 (149-257)||(12498565-12498673)
chr5 (149-259)||(10098889-10098998)
chr5 (149-255)||(21207226-21207332)
chr5 (149-265)||(2817139-2817254)
chr5 (149-257)||(26570727-26570835)
chr5 (149-257)||(26571112-26571220)
chr5 (149-257)||(41072162-41072269)
chr5 (149-252)||(3888242-3888345)
chr5 (149-252)||(19514911-19515014)
chr5 (149-252)||(22729388-22729490)
chr5 (149-234)||(19514547-19514632)
chr5 (149-234)||(42919325-42919410)
chr5 (199-263)||(31569899-31569962)
chr5 (149-252)||(22729011-22729112)
chr5 (149-252)||(37780692-37780793)
chr5 (149-256)||(43463755-43463861)
chr5 (149-234)||(25940542-25940627)
chr5 (172-252)||(10098522-10098602)
chr5 (149-252)||(34147144-34147245)
chr5 (149-256)||(11316922-11317029)
chr5 (149-252)||(37610567-37610668)
chr5 (148-234)||(11350829-11350914)
chr5 (74-123)||(31570431-31570480)
chr5 (201-249)||(16726084-16726132)
chr5 (149-252)||(18433018-18433122)
[»] chr3 (28 HSPs)
chr3 (258-333)||(47863715-47863790)
chr3 (74-263)||(1928307-1928495)
chr3 (149-252)||(8314016-8314119)
chr3 (149-263)||(48159889-48160003)
chr3 (149-255)||(53766163-53766268)
chr3 (149-257)||(26007567-26007675)
chr3 (149-257)||(27238463-27238571)
chr3 (149-260)||(3353500-3353609)
chr3 (149-252)||(42673244-42673346)
chr3 (149-252)||(53687891-53687994)
chr3 (149-255)||(27238848-27238954)
chr3 (149-234)||(21896459-21896544)
chr3 (149-237)||(22429544-22429632)
chr3 (149-252)||(10348747-10348850)
chr3 (149-262)||(40848909-40849022)
chr3 (149-263)||(9026728-9026839)
chr3 (149-252)||(48160281-48160384)
chr3 (149-242)||(24485034-24485127)
chr3 (149-234)||(24485408-24485493)
chr3 (149-234)||(36180575-36180660)
chr3 (149-252)||(3353131-3353231)
chr3 (149-252)||(22429161-22429264)
chr3 (149-252)||(42672981-42673083)
chr3 (199-257)||(47665909-47665967)
chr3 (177-234)||(26007202-26007259)
chr3 (149-222)||(42456144-42456216)
chr3 (149-234)||(53688251-53688336)
chr3 (203-255)||(23630037-23630089)
[»] chr6 (10 HSPs)
chr6 (82-263)||(33829517-33829698)
chr6 (267-325)||(28324733-28324791)
chr6 (82-252)||(33828993-33829162)
chr6 (149-252)||(7654496-7654599)
chr6 (149-252)||(10087806-10087909)
chr6 (149-252)||(33974247-33974350)
chr6 (149-232)||(22755038-22755120)
chr6 (203-257)||(30388364-30388418)
chr6 (203-263)||(18241846-18241906)
chr6 (207-255)||(33973864-33973912)
[»] chr2 (29 HSPs)
chr2 (82-258)||(2639363-2639539)
chr2 (82-257)||(26841585-26841760)
chr2 (149-263)||(7664240-7664354)
chr2 (82-263)||(7591193-7591373)
chr2 (82-252)||(18296079-18296248)
chr2 (82-234)||(2638841-2638994)
chr2 (149-256)||(8851147-8851254)
chr2 (149-256)||(26692395-26692502)
chr2 (83-234)||(26842120-26842271)
chr2 (82-236)||(7591731-7591885)
chr2 (149-252)||(7664621-7664724)
chr2 (149-252)||(8851531-8851633)
chr2 (149-255)||(26692768-26692874)
chr2 (152-252)||(6325298-6325398)
chr2 (82-186)||(18296603-18296707)
chr2 (147-264)||(5379905-5380022)
chr2 (74-118)||(29230446-29230490)
chr2 (74-118)||(29343745-29343789)
chr2 (149-252)||(16911217-16911319)
chr2 (149-252)||(17850981-17851083)
chr2 (149-263)||(30190915-30191030)
chr2 (150-252)||(37720207-37720307)
chr2 (149-257)||(41790860-41790968)
chr2 (149-232)||(7979588-7979671)
chr2 (149-263)||(40469676-40469791)
chr2 (147-257)||(5378659-5378769)
chr2 (172-234)||(18750097-18750159)
chr2 (149-255)||(41790491-41790596)
chr2 (149-222)||(38490789-38490862)
[»] chr1 (38 HSPs)
chr1 (258-325)||(52335133-52335200)
chr1 (149-265)||(39691948-39692064)
chr1 (82-252)||(6002240-6002410)
chr1 (149-258)||(28634105-28634214)
chr1 (149-257)||(6703458-6703566)
chr1 (149-257)||(26815067-26815175)
chr1 (149-252)||(13918449-13918552)
chr1 (149-256)||(48104677-48104784)
chr1 (149-252)||(50615569-50615671)
chr1 (149-252)||(50623397-50623499)
chr1 (82-252)||(49284412-49284581)
chr1 (82-228)||(49284936-49285082)
chr1 (149-252)||(9347129-9347232)
chr1 (149-252)||(20480171-20480273)
chr1 (149-252)||(26814697-26814800)
chr1 (149-256)||(42611184-42611291)
chr1 (149-252)||(50526420-50526523)
chr1 (149-255)||(42611562-42611668)
chr1 (149-255)||(46823843-46823949)
chr1 (149-255)||(50430029-50430135)
chr1 (82-222)||(6002774-6002915)
chr1 (149-258)||(28633717-28633826)
chr1 (149-257)||(32162991-32163099)
chr1 (149-252)||(27172119-27172221)
chr1 (149-252)||(48105064-48105167)
chr1 (147-257)||(19008696-19008806)
chr1 (149-257)||(44911023-44911131)
chr1 (82-186)||(48191266-48191369)
chr1 (199-255)||(50949161-50949217)
chr1 (149-256)||(999111-999216)
chr1 (149-252)||(21687028-21687131)
chr1 (203-252)||(33085674-33085723)
chr1 (160-252)||(13918826-13918918)
chr1 (149-252)||(50429659-50429762)
chr1 (149-260)||(50949513-50949624)
chr1 (149-234)||(20371059-20371143)
chr1 (203-259)||(8108717-8108773)
chr1 (172-228)||(24671283-24671339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (267-325)||(116048-116106)
[»] chr7 (28 HSPs)
chr7 (82-252)||(44599492-44599662)
chr7 (149-252)||(17156970-17157073)
chr7 (149-264)||(20419272-20419387)
chr7 (149-255)||(18863967-18864073)
chr7 (82-234)||(13863334-13863486)
chr7 (149-257)||(18864350-18864457)
chr7 (149-252)||(22740159-22740262)
chr7 (82-252)||(44600017-44600186)
chr7 (149-257)||(10533032-10533140)
chr7 (149-257)||(20418886-20418994)
chr7 (149-252)||(3205041-3205144)
chr7 (149-252)||(37888836-37888939)
chr7 (149-263)||(37889207-37889321)
chr7 (82-265)||(13863839-13864020)
chr7 (149-252)||(13744181-13744283)
chr7 (149-252)||(37972344-37972447)
chr7 (149-252)||(38826861-38826964)
chr7 (160-254)||(22740550-22740643)
chr7 (149-252)||(9035240-9035344)
chr7 (149-260)||(42418976-42419087)
chr7 (149-252)||(48359323-48359424)
chr7 (191-256)||(36527383-36527447)
chr7 (149-262)||(37971953-37972066)
chr7 (146-222)||(8643711-8643787)
chr7 (149-252)||(13741560-13741663)
chr7 (146-257)||(46816256-46816367)
chr7 (149-251)||(48359606-48359707)
chr7 (149-234)||(3204688-3204773)
[»] scaffold0328 (2 HSPs)
scaffold0328 (82-234)||(6676-6828)
scaffold0328 (82-221)||(6186-6324)
[»] scaffold0460 (1 HSPs)
scaffold0460 (149-252)||(333-436)
[»] scaffold0041 (1 HSPs)
scaffold0041 (149-252)||(38643-38746)
[»] scaffold0017 (1 HSPs)
scaffold0017 (149-252)||(185222-185325)
[»] scaffold0176 (1 HSPs)
scaffold0176 (149-258)||(19992-20100)
[»] scaffold0069 (1 HSPs)
scaffold0069 (149-234)||(50094-50178)
[»] scaffold0001 (1 HSPs)
scaffold0001 (203-255)||(183364-183415)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 56505874 - 56505690
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatag 173  Q
    ||||||| |||| ||||||||| | ||||||||||| |||||||||||||   || ||| ||| ||||    |||||| |||||| |||||||| ||| |    
T  56505874 acacatgtcaaaaattaaatgaaggcacatcatcaatatcagacacatcatcactaaaacacatggggggccttcaaaccagaaagggggaaaaagatgg 56505775  T
Q  174 ggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctat 258  Q
    |||||||||| || || |||||| |||| |||||||||||| ||||||| ||||| ||||| || |||||| ||||||| |||||    
T  56505774 ggtgcaaaatagctcaattaaaaatatggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcctat 56505690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 36095989 - 36095809
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||||||| ||||    | ||||||||||| |||||||| |||||||||||||    
T  36095989 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacatggggggcctccaaatcagaaa-ggggaaaaagatagggtgcaaa 36095891  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||| | ||||||| ||| ||||||    
T  36095890 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcctttttttt 36095809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 50679305 - 50679475
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  50679305 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 50679404  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  50679405 atcgctcgtttaaaaacatggggtgcaaaatcgtacaattggcaaaagataggggtgaaaagtgcaattaa 50679475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 9023628 - 9023745
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| || |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  9023628 aaatcagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 9023727  T
Q  249 ttaaacctattttttaat 266  Q
    |||| |||  ||||||||    
T  9023728 ttaagccttgtttttaat 9023745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 36096356 - 36096529
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| ||| |||| ||| |||||||||    
T  36096356 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaaggggaaaaaagatggggtgcaaa 36096455  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||||||    
T  36096456 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaaacc 36096529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 39744413 - 39744521
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  39744413 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 39744512  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  39744513 ttaagccta 39744521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 258
Target Start/End: Complemental strand, 50678951 - 50678776
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  50678951 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 50678853  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctat 258  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| |||||    
T  50678852 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcctat 50678776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 293165 - 293282
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  ||| || |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  293165 aaatcagaaagggggaaaactatacggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaa 293264  T
Q  249 ttaaacctattttttaat 266  Q
    |||| ||| || ||||||    
T  293265 ttaagccttttatttaat 293282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 9380689 - 9380801
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||  ||||||||||| ||||||| |||| |||||| || |||||| |||    
T  9380689 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggagtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 9380788  T
Q  249 ttaaacctatttt 261  Q
    |||| ||||||||    
T  9380789 ttaagcctatttt 9380801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 28196452 - 28196344
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  28196452 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaattataggggggaaaagtgcaa 28196353  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  28196352 ttaagccta 28196344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 4239314 - 4239417
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  4239314 aaatcagaaagggggaaaaatatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaa 4239413  T
Q  249 ttaa 252  Q
    ||||    
T  4239414 ttaa 4239417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 28196721 - 28196824
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  28196721 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 28196820  T
Q  249 ttaa 252  Q
    ||||    
T  28196821 ttaa 28196824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 32703598 - 32703701
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  32703598 aaatcagaaaaggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 32703697  T
Q  249 ttaa 252  Q
    ||||    
T  32703698 ttaa 32703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 25161983 - 25161881
Alignment:
Q  150 aatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaat 249  Q
    ||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| ||||    
T  25161983 aatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaat 25161884  T
Q  250 taa 252  Q
    |||    
T  25161883 taa 25161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 256
Target Start/End: Complemental strand, 43050788 - 43050606
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatag 173  Q
    |||| ||||||||||||||||| ||||| |||||||||||| ||||||||   || ||| ||| || |    | ||||||||||| |||||||| ||| |    
T  43050788 acacgtgacaaacattaaatgaagacacgtcatcaaaatcaaacacatcatcactaaaacacatggagggcctccaaatcagaaagggggaaaaagatgg 43050689  T
Q  174 ggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacct 256  Q
    ||||||||||| | |  ||||||  ||| |||||||||||| |||||||  |||| |||||    |||||| |||||||||||    
T  43050688 ggtgcaaaatcactcgtttaaaaacatggggtgcaaaatcgcacaattggtaaaagatagggatgaaaagtgcaattaaacct 43050606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 56506471 - 56506631
Alignment:
Q  98 acacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaag 197  Q
    ||||||||||||||| ||||||||||   || ||| ||||| ||    ||||||||||||| |||||||||||| |||||||||||||| || ||||||     
T  56506471 acacatcatcaaaattagacacatcatcactaaaacacacgaggggccttcaaatcagaaagggggaaaatgatggggtgcaaaatcgctcaattaaaaa 56506570  T
Q  198 tatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctat 258  Q
     |||  || |||||| | ||||||| ||||| ||| | |  |||||| ||||||| |||||    
T  56506571 catggagtacaaaattgcacaattggcaaaagataagggtgaaaagtgcaattaagcctat 56506631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 169387 - 169490
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||| | |||    
T  169387 aaatcaaaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaaatgcaa 169486  T
Q  249 ttaa 252  Q
    ||||    
T  169487 ttaa 169490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 12757872 - 12757766
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  || ||||  ||||||  ||||||||| |  |||||| |||||| |||||||||| |||||||||||| ||||| ||| ||||||||||    
T  12757872 aaatcagaaagaggaaaaactataggggacaaaatcgctcgtttaaaactatgagatgcaaaatcgcacaattgacaaactatagaagg-aaaagtacaa 12757774  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  12757773 ttaaacct 12757766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 43051134 - 43051285
Alignment:
Q  83 aaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaaa 182  Q
    ||||||||||||| ||||| ||||||||| |||||||||||   || ||| ||| ||||    | |||||||||||  ||||||| ||| ||||||||||    
T  43051134 aaacattaaatgaagacacgtcatcaaaaacagacacatcatcactaaaacacatggggggcctccaaatcagaaagagggaaaaagatggggtgcaaaa 43051233  T
Q  183 tcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||| |  ||||||  ||| |||||||||||  ||||||| ||||| |||||    
T  43051234 tcgctcgtttaaaaacatggggtgcaaaatcacacaattggcaaaagatagg 43051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 43292143 - 43292040
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| |  |||||| |||    
T  43292143 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggaaaaaagtgcaa 43292044  T
Q  249 ttaa 252  Q
    ||||    
T  43292043 ttaa 43292040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 25162261 - 25162346
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||  ||||||||||  |||||||||||||||||||    
T  25162261 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggagtgcaaaatcacacaattgacaaaatatagg 25162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 44468871 - 44468956
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| | ||||||  |||||| |||||||||| |  |||||| ||||||||||||||||| ||||||| |||| ||||||    
T  44468871 aaatcagaaaggaggaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattggcaaactatagg 44468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 24775785 - 24775845
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||||| ||| ||||||    
T  24775785 ggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagcctttttttt 24775845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 45830079 - 45830229
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||  |||||||||||||||||||||   || ||| | | ||||   |  ||||||||||| |||||||| ||| |||||||||    
T  45830079 caaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaacatatggggggctc-caaatcagaaa-ggggaaaaagatggggtgcaaa 45830176  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||| |  ||||||  ||| |||| ||||||| ||||||||||||| |||||    
T  45830177 atcgctcttttaaaaacatggggtgtaaaatcgcacaattgacaaaagatagg 45830229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 23540200 - 23540303
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| | |||||||| |  |||||| |||  |||||||||||| |||||||||||| |||||| |  |||||| |||    
T  23540200 aaatcagaaagggggaaaactatagggggtaaaatcgctcgtttaaaactatagggtgcaaaatcgcacaattgacaaactataggggtgaaaagtgcaa 23540299  T
Q  249 ttaa 252  Q
    ||||    
T  23540300 ttaa 23540303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 39086571 - 39086654
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatata 232  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||| ||||||||||||| ||||||| |||| ||||    
T  39086571 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactattaggtgcaaaatcgcacaattggcaaactata 39086654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 48406333 - 48406438
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||  |||||||||||| ||||||| |||| |||||| ||  |||||||||    
T  48406333 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaactatagggtgcaaaatcgcacaattggcaaattatagg-ggggaaagtacaa 48406431  T
Q  249 ttaaacc 255  Q
    |||||||    
T  48406432 ttaaacc 48406438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 169120 - 169035
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||    
T  169120 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaattatggggtgcaaaatcgcacaattggcaaactatagg 169035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 9023350 - 9023242
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| ||||||||  |||||| |||||||| | |  |||||| |||| |||||||||||| ||||||| |||| |||||| |  |||||| |||    
T  9023350 aaatcataaagggggaaaactatagggggcaaaatcactcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggagaaaagtgcaa 9023251  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  9023250 ttaagccta 9023242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 11529341 - 11529300
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatca 123  Q
    |||||||||||||| ||||| | |||||||||||||||||||    
T  11529341 caaacattaaatgaagacacctaatcaaaatcagacacatca 11529300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 45829166 - 45829125
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatca 123  Q
    |||||||||||||| ||||  |||||||||||||||||||||    
T  45829166 caaacattaaatgaagacatgtcatcaaaatcagacacatca 45829125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 47219086 - 47219127
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatca 123  Q
    |||||||||||||| ||||| |||||||||||| ||||||||    
T  47219086 caaacattaaatgaggacacgtcatcaaaatcaaacacatca 47219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 13198908 - 13198968
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    |||||||||||| |||||| |||||| ||||| || |||||| ||||||| ||| ||||||    
T  13198908 ggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcctttttttt 13198968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 24775690 - 24775642
Alignment:
Q  207 caaaatcgaacaattgac-aaaatataggaggcaaaagtacaattaaac 254  Q
    |||||||| ||||||||| |||||||||| ||||||||| |||||||||    
T  24775690 caaaatcgcacaattgacaaaaatatagggggcaaaagtgcaattaaac 24775642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 13026808 - 13026633
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  13026808 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 13026709  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaaccta 257  Q
    ||||| |  ||||||  |||||||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| ||||    
T  13026708 atcgctcgtttaaaaacatgaggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagccta 13026633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 43591857 - 43591794
Alignment:
Q  258 ttttttaatgacctcacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtg 321  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43591857 ttttttaaggaccttacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtg 43591794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 34498227 - 34498111
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||| | ||||||||||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  34498227 aaatcagaaagggggaaact-atagggtgcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaa 34498129  T
Q  249 ttaaacctattttttaat 266  Q
    ||||||| ||| ||||||    
T  34498128 ttaaaccaattatttaat 34498111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 9822929 - 9822751
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatag 173  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||| |   || ||| ||| |||     | ||||||||||| |||||||| ||||     
T  9822929 acacatggcaaacattaaatgaagacacgtcatcaaaatcagacacatgatcactaaaacacatgggtggcctccaaatcagaaagggggaaaaagatat 9822830  T
Q  174 ggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||||||||||| |  ||||||  ||| |||||||||||| |||||||| |||| ||||| |  |||||| |||||||    
T  9822829 ggtgcaaaatcgctcgtttaaaaacatggggtgcaaaatcgcacaattgataaaagataggggtgaaaagtgcaattaa 9822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 9823242 - 9823412
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||  |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  9823242 caaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 9823341  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  9823342 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 9823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 13027163 - 13027335
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  13027163 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 13027261  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||||||    
T  13027262 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaaacc 13027335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 22851563 - 22851393
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    ||||||||||||||  |||| |||||||||||||||||||||   || ||| ||| || |    | ||||||||||| |||||||| ||| |||||||||    
T  22851563 caaacattaaatgaacacacgtcatcaaaatcagacacatcatcactaaaacacatggagggcctccaaatcagaaagggggaaaaagatggggtgcaaa 22851464  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    |||||    ||||||  ||| |||||||||||| ||||||||||||| ||||| |  |||||| |||||||    
T  22851463 atcgcttgtttaaaaacatggggtgcaaaatcgcacaattgacaaaagataggggtgaaaagtgcaattaa 22851393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 39723597 - 39723424
Alignment:
Q  62 aaaattctatttacacat--gacaaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaat 159  Q
    |||||| |||||||||||  | |||||||||||||| ||||| ||||||||| |||||||||||   || ||| ||| ||||    | |||||||||||     
T  39723597 aaaattatatttacacatatggcaaacattaaatgaagacacgtcatcaaaaacagacacatcatcactaaaacacatggggggcctccaaatcagaaag 39723498  T
Q  160 ggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatag 233  Q
    |||||||| ||| |||||||||||||| |  ||||||  ||| | |||||||||| ||||||| ||||| ||||    
T  39723497 ggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatgggatgcaaaatcgcacaattggcaaaagatag 39723424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 39723929 - 39724099
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||| ||||||||   || ||| ||| || |    | ||||||||||| |||||||| ||| |||||||||    
T  39723929 caaacattaaatgaagacacgtcatcaaaatcaaacacatcatcactaaaacacatggagggcctccaaatcagaaagggggaaaaagatggggtgcaaa 39724028  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  39724029 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 39724099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 17431393 - 17431290
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||||||| ||||||| |||||||||||| |||| | || |||||| |||    
T  17431393 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgaaaaatcgcacaattgacaaactatatgggggaaaagtgcaa 17431294  T
Q  249 ttaa 252  Q
    ||||    
T  17431293 ttaa 17431290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 37396814 - 37396699
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||| | |||| |||||| || |||||| |||    
T  37396814 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaatcggcaaactataggggggaaaagtgcaa 37396715  T
Q  249 ttaaacctatttttta 264  Q
    |||| |||| ||||||    
T  37396714 ttaagcctaattttta 37396699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 24473449 - 24473346
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| |||| |||  |||||| |||||||||| || |||||| |||| |||||||||||  ||||||| |||| |||||| || |||||| |||    
T  24473449 aaatcagaaaggggggaaactatagggggcaaaatcgctcatttaaaattatggggtgcaaaatcacacaattggcaaactatagggggaaaaagtgcaa 24473350  T
Q  249 ttaa 252  Q
    ||||    
T  24473349 ttaa 24473346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 13936830 - 13936726
Alignment:
Q  146 ttcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagta 245  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |  |||||| |||| |||||||||||| |||||||  |||| ||||| || ||||||     
T  13936830 ttcaaatcagaaa-ggggaaaaagatggggtgcaaaatcgctcgtttaaaaatatggggtgcaaaatcgcacaattggtaaaagatagg-gggaaaagtg 13936733  T
Q  246 caattaa 252  Q
    |||||||    
T  13936732 caattaa 13936726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 6092881 - 6092796
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||| |||| |||||||| ||| |||||||||||||  || |||||| |||| | |||||||||| ||||||||||||| |||||    
T  6092881 aaatctgaaaaggggaaaaagatggggtgcaaaatcgttcaattaaaaatatgggatgcaaaatcgcacaattgacaaaagatagg 6092796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 13937334 - 13937446
Alignment:
Q  146 ttcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagta 245  Q
    |||||| |||||| |||||||| |||  ||||||||||| | |  ||||||  ||| |||||||| ||| ||||||||||||| ||||| || ||||||     
T  13937334 ttcaaaccagaaagggggaaaaggatgaggtgcaaaatcactcgtttaaaaacatggggtgcaaattcgcacaattgacaaaaaataggggggaaaagtg 13937433  T
Q  246 caattaaacctat 258  Q
    ||||||| |||||    
T  13937434 caattaagcctat 13937446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 15042251 - 15042143
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| |||||||||||| | |||||||||||| || ||||||  ||  |||||||||||  ||||||| ||||| ||| | ||  ||||| |||    
T  15042251 aaatcagaaagggggaaaatgatggcgtgcaaaatcgctcatttaaaacaatagggtgcaaaatcacacaattggcaaaagataaggggggaaagtgcaa 15042152  T
Q  249 ttaaaccta 257  Q
    |||||||||    
T  15042151 ttaaaccta 15042143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 20861586 - 20861689
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||| |||||  |||||||||| |  |||||| |||| |||||||||||| ||||||| || | |||||| || |||| | |||    
T  20861586 aaatcagaaagggggaaaattataggaggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcagactatagggggaaaaaatgcaa 20861685  T
Q  249 ttaa 252  Q
    ||||    
T  20861686 ttaa 20861689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 25439102 - 25439180
Alignment:
Q  177 gcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacct 256  Q
    |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||||||||||    
T  25439102 gcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-ggaaaaagtgcaattaaacct 25439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 41662627 - 41662524
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||| ||||| || |||||  |||||| |||||||||| |  |||||| ||||||||||||||||| ||||||| |||| |||| | || |||||| |||    
T  41662627 aaattagaaagggagaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattggcaaactatatgggggaaaagtgcaa 41662528  T
Q  249 ttaa 252  Q
    ||||    
T  41662527 ttaa 41662524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 3307445 - 3307359
Alignment:
Q  148 caaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||||||||| || ||||| ||| ||||||||||||||    |||||| |||| | |||||||||| ||||||||||||| |||||    
T  3307445 caaatcagaaagggagaaaaagatggggtgcaaaatcgcttgtttaaaaatatgggatgcaaaatcgcacaattgacaaaagatagg 3307359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 6198764 - 6198691
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattg 222  Q
    |||||||||||||||||||  |||||| |||||||||| |  |||||| |||  |||||||||||| |||||||    
T  6198764 aaatcagaaatggggaaaactatagggggcaaaatcgctcgtttaaaactatagggtgcaaaatcgcacaattg 6198691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 15442857 - 15442752
Alignment:
Q  161 gggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctattt 260  Q
    ||||||| |||||||||||||||||| |  ||||||  ||| |||||||||||  ||||||| | ||||||||| || |||| | |||||||  ||| ||    
T  15442857 gggaaaaggatagggtgcaaaatcgcacgtttaaaaacatggggtgcaaaatcacacaattggcgaaatataggggggaaaaatgcaattaagtctactt 15442758  T
Q  261 tttaat 266  Q
    ||||||    
T  15442757 tttaat 15442752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 24473716 - 24473801
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  ||||||  ||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||    
T  24473716 aaatcagaaagggggaaaactataggggacaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg 24473801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 15444595 - 15444703
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  ||||||   |||||||| |  |||||| |||| |||||||||||| |||||||  ||| |||||| || |||||| |||    
T  15444595 aaatcagaaagagggaaaactataggggataaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggtaaattatagggggaaaaagtgcaa 15444694  T
Q  249 ttaaaccta 257  Q
    |||||||||    
T  15444695 ttaaaccta 15444703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 33727053 - 33727125
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaatt 221  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||| ||||||||||| ||||||    
T  33727053 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatgaagtgcaaaatcgcacaatt 33727125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 41662350 - 41662454
Alignment:
Q  149 aaatcagaaatgggg-aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| |||| |||| ||| |||||||||||||| || | ||||  | | |||||||||||| ||||||| ||||| ||||| || |||||| ||    
T  41662350 aaatcagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgca 41662449  T
Q  248 attaa 252  Q
    |||||    
T  41662450 attaa 41662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 6092938 - 6092903
Alignment:
Q  73 tacacatgacaaacattaaatgatgacacatcatca 108  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6092938 tacacatgacaaacattaaatgaagacacatcatca 6092903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 12281215 - 12281116
Alignment:
Q  164 aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    |||| ||| |||||||||||||| ||   ||||  | |||||||||||||| ||||||| ||||| ||||| || |||||| ||||||| ||| ||||||    
T  12281215 aaaaagatggggtgcaaaatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcctttttttt 12281116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 15156187 - 15156236
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    |||||||||||| ||||||||||||| ||||| || |||||| |||||||    
T  15156187 ggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaattaa 15156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 23123390 - 23123341
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    |||| ||||||| ||||||||||||| |||||||| |||||| |||||||    
T  23123390 ggtgtaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaa 23123341  T

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Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 25438856 - 25438795
Alignment:
Q  191 ttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||||||    
T  25438856 ttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 25438795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 9623608 - 9623524
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatag 233  Q
    ||||||||||  |||||||  |||||| ||||||| || |  |||||| |||| |||||||||||| ||||||| |||| |||||    
T  9623608 aaatcagaaaaagggaaaactatagggggcaaaattgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatag 9623524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 34498503 - 34498611
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| ||| |||| |    |||||| |||| |||||||||||| ||||||  |||| |||||| || |||||| |||    
T  34498503 aaatcagaaagggggaaaaatatagggggcataatctcttgtttaaaactatggggtgcaaaatcgcacaatttgcaaactataggggggaaaagtgcaa 34498602  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  34498603 ttaagccta 34498611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 43245978 - 43245874
Alignment:
Q  149 aaatcagaaatgggg-aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| |||| |||| ||| |||||||||||||| || | ||||  | | |||||||||||| ||||||  ||||| ||||| || |||||| ||    
T  43245978 aaatcagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagatagggggaaaaagtgca 43245879  T
Q  248 attaa 252  Q
    |||||    
T  43245878 attaa 43245874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 265
Target Start/End: Original strand, 18817492 - 18817675
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||  | | ||||||||||| |||||||| ||| |||||||||    
T  18817492 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcgctaaaacacatggggggtctccaaatcagaaagggggaaaaagatggggtgcaaa 18817591  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctattttttaa 265  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| || || ||||||    
T  18817592 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagccaatattttaa 18817675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 11351310 - 11351483
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| ||||||||||||||||||||| | || ||| ||| ||||   |  ||||||| ||| |||||||| ||| ||||| |||    
T  11351310 caaacattaaatgaagacacgtcatcaaaatcagacacatcattactaaaacacatgggggcctc-caaatcataaagggggaaaa-gatggggtgtaaa 11351407  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaaccta 257  Q
    ||||| |  |||||| |||| |||||||||||| ||||||| ||||| |||||||  |||||| ||||||||||||    
T  11351408 atcgctcgtttaaaaatatggggtgcaaaatcgcacaattggcaaaagataggagtgaaaagtgcaattaaaccta 11351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 18817125 - 18816973
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||||||  ||||    | ||||||||||| |||||||| ||| || ||||||    
T  18817125 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtggggggcctccaaatcagaaagggggaaaaagatgggatgcaaa 18817026  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| |||||    
T  18817025 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagatagg 18816973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 43464140 - 43464247
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||||||||||||||| |||||||||||| |||||| || |||||| |||    
T  43464140 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 43464238  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  43464239 ttaagccta 43464247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 3888610 - 3888717
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||| |||| |||||| |||    
T  3888610 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgtacaattggcaaattataagagggaaaagtgcaa 3888709  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  3888710 ttaaacct 3888717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 34147458 - 34147561
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| || |||||||||||||| |||||||||||| |||||| || |||||| |||    
T  34147458 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactacgaggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaa 34147557  T
Q  249 ttaa 252  Q
    ||||    
T  34147558 ttaa 34147561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 12498876 - 12498993
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| ||||||||||    |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  12498876 aaatcagaaagggggaaaactatagggggcaaaatcgcttgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 12498975  T
Q  249 ttaaacctattttttaat 266  Q
    |||| |||| ||||||||    
T  12498976 ttaagcctaatttttaat 12498993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 12498673 - 12498565
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  12498673 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 12498574  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  12498573 ttaagccta 12498565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 10098889 - 10098998
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  ||||||   |||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||||| |||||| |||    
T  10098889 aaatcagaaagagggaaaactataggggataaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggagg-aaaagtgcaa 10098987  T
Q  249 ttaaacctatt 259  Q
    |||||||||||    
T  10098988 ttaaacctatt 10098998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 21207332 - 21207226
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  21207332 aaatcagaaagggtgaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 21207233  T
Q  249 ttaaacc 255  Q
    |||||||    
T  21207232 ttaaacc 21207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 2817254 - 2817139
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||| |||||| |||||||||| |  |||||| |||| | |||||||||| ||||||| |||| ||||||  | |||||| |||    
T  2817254 aaatcagaaaggggaaaaat-atagggggcaaaatcgctcgtttaaaattatgggatgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaa 2817156  T
Q  249 ttaaacctattttttaa 265  Q
    |||||||| ||||||||    
T  2817155 ttaaaccttttttttaa 2817139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 26570835 - 26570727
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  ||||||  ||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || ||||||  ||    
T  26570835 aaatcagaaagggggaaaactataggggacaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgtaa 26570736  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  26570735 ttaagccta 26570727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 26571112 - 26571220
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| | ||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  26571112 aaatcagaaaggaggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 26571211  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  26571212 ttaagccta 26571220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 41072162 - 41072269
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||| ||||| ||||||||  |||||| |||||||||| |  |||||| |||  |||||||||||| |||||||||||| ||||||||| ||||||  ||    
T  41072162 aaattagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatagggtgcaaaatcgtacaattgacaaactataggagg-aaaagtgtaa 41072260  T
Q  249 ttaaaccta 257  Q
    |||||||||    
T  41072261 ttaaaccta 41072269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 3888345 - 3888242
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || ||| || |||    
T  3888345 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgtacaattggcaaactataggggggaaatgtgcaa 3888246  T
Q  249 ttaa 252  Q
    ||||    
T  3888245 ttaa 3888242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 19514911 - 19515014
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||  | |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  19514911 aaatcagaaagggggaaaactatagggggcaaaataactcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 19515010  T
Q  249 ttaa 252  Q
    ||||    
T  19515011 ttaa 19515014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 22729388 - 22729490
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  22729388 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaattatagg-gggaaaagtgcaa 22729486  T
Q  249 ttaa 252  Q
    ||||    
T  22729487 ttaa 22729490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 19514632 - 19514547
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||    
T  19514632 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg 19514547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 42919410 - 42919325
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||| ||||||||||||||||||||||| |  ||||||  ||| |||| ||||||| |||||||  ||||||||||    
T  42919410 aaatcagaaaggggaaaaatgatagggtgcaaaatcgctcgtttaaaaacatgtggtgaaaaatcgcacaattggaaaaatatagg 42919325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 31569962 - 31569899
Alignment:
Q  199 atgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    |||||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| ||||    
T  31569962 atgaggtgcaaaatcgcacaattgacaaaagatagg-gggaaaagtgcaattaaacctatctttt 31569899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 22729112 - 22729011
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||| ||||||||||| |||||| ||||| |||||| || |||||| |||    
T  22729112 aaatcagaaagggggaaaactataggg-gcaaaatcgctcgtttaaaactatgaagtgcaaaatcgcacaatttacaaactatagg-gggaaaagtgcaa 22729015  T
Q  249 ttaa 252  Q
    ||||    
T  22729014 ttaa 22729011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 37780692 - 37780793
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||| | |||||| |||||||||| |  ||||||  |||||||||||||||| ||||||  |||| |||||| || ||||||||||    
T  37780692 aaatcagaaagggggaaact-ataggg-gcaaaatcgctcgtttaaaacaatgaggtgcaaaatcgcacaattagcaaactataggggggaaaagtacaa 37780789  T
Q  249 ttaa 252  Q
    ||||    
T  37780790 ttaa 37780793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 43463861 - 43463755
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||| | || |||||| |||    
T  43463861 aaatcagaaagggagaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataag-gggaaaagtgcaa 43463763  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  43463762 ttaaacct 43463755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 25940627 - 25940542
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||  |||||||||||| |||||||||||| ||||||    
T  25940627 aaatcagaaagggtgaaaactatagggggcaaaatcgctcgtttaaaactatagggtgcaaaatcgcacaattgacaaactatagg 25940542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 10098602 - 10098522
Alignment:
Q  172 agggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    |||| |||||||||| |  |||||| |||  | |||||||||| |||||||||||| ||||||||| |||||| |||||||    
T  10098602 agggggcaaaatcgctcgtttaaaactataggatgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaattaa 10098522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 34147245 - 34147144
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| || | |||||||||||| |||||||| ||| ||||  ||| |||||| |||    
T  34147245 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactacggggtgcaaaatcgcacaattgataaactata--agggaaaagtgcaa 34147148  T
Q  249 ttaa 252  Q
    ||||    
T  34147147 ttaa 34147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 11316922 - 11317029
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  |||||| |||||||||| || ||||||  ||| |||||||||||| ||||||| |||| || ||  |  |||||| |||    
T  11316922 aaatcagaaagagggaaaactatagggggcaaaatcgctcatttaaaacaatggggtgcaaaatcgcacaattggcaaagtacagaggaaaaaagtgcaa 11317021  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  11317022 ttaaacct 11317029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 37610567 - 37610668
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||| | |||||| |||||||||| |  ||||||  |||||||||||||||| ||||||  |||| |||||| ||  |||||||||    
T  37610567 aaatcagaaagggggaaact-atagggggcaaaatcgctcgtttaaaacaatgaggtgcaaaatcgcacaattagcaaactatagg-ggggaaagtacaa 37610664  T
Q  249 ttaa 252  Q
    ||||    
T  37610665 ttaa 37610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 11350914 - 11350829
Alignment:
Q  148 caaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||||| ||| |||||||| ||| |||||||||||||| |  |||||| |||| |||||||||| | ||||||| ||||| |||||    
T  11350914 caaatcaaaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaatatggggtgcaaaat-gcacaattggcaaaagatagg 11350829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 31570431 - 31570480
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagacacatca 123  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||||||||||    
T  31570431 acacatgtcaaaaattaaatgaagacatgtcatcaaaatcagacacatca 31570480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 16726132 - 16726084
Alignment:
Q  201 gaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaat 249  Q
    |||||||||||||| ||||||| ||||| ||||| ||||||||| ||||    
T  16726132 gaggtgcaaaatcgcacaattggcaaaagatagggggcaaaagtgcaat 16726084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 18433122 - 18433018
Alignment:
Q  149 aaatcagaaatgggg-aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| |||| |||| ||| |||||||||||||| ||   ||||  ||| |||||||||||| ||||||  ||||| ||||| || |||||| ||    
T  18433122 aaatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgca 18433023  T
Q  248 attaa 252  Q
    |||||    
T  18433022 attaa 18433018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 47863715 - 47863790
Alignment:
Q  258 ttttttaatgacctcacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgatccaatgtt 333  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47863715 ttttttaaggaccttacattaaagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgatgcaatgtt 47863790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 1928307 - 1928495
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatag 173  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||   || ||| | | ||||    |||||| |||||| |||||||| |||||    
T  1928307 acacatgtcaaaaattaaatgaagacacatcatcaaaatcagacacatcatcactaaaacatatgggggcccttcaaaccagaaaaggggaaaaggatag 1928406  T
Q  174 ggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    ||||||||| | | |  |||||| |||| |||||||||||| ||||||| ||||| |||||  | |||| | |||||||||||| |||||    
T  1928407 ggtgcaaaaccactcgtttaaaaatatggggtgcaaaatcgcacaattggcaaaagatagggaggaaaa-tgcaattaaacctaattttt 1928495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 8314119 - 8314016
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||||||||||||||||||||| |  ||||||  ||  |||||||||||| ||||||||||||||||||| |  |||||| |||    
T  8314119 aaatcagaaagggggaaaatgatagggtgcaaaatcgcacgtttaaaaacattgggtgcaaaatcgcacaattgacaaaatataggggagaaaagtgcaa 8314020  T
Q  249 ttaa 252  Q
    ||||    
T  8314019 ttaa 8314016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 48160003 - 48159889
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  48160003 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 48159904  T
Q  249 ttaaacctatttttt 263  Q
    |||| ||||||||||    
T  48159903 ttaagcctatttttt 48159889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 53766268 - 53766163
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||||||||||| | |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||||| |||||| |||    
T  53766268 aaatcaaaaatggggaaact-atagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaa 53766170  T
Q  249 ttaaacc 255  Q
    |||||||    
T  53766169 ttaaacc 53766163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 26007567 - 26007675
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||| ||||||||||| ||||||| |||| |||||| || |||||| |||    
T  26007567 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaattatgaagtgcaaaatcgtacaattggcaaactatagggggaaaaagtgcaa 26007666  T
Q  249 ttaaaccta 257  Q
    |||||||||    
T  26007667 ttaaaccta 26007675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 27238571 - 27238463
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||  |||||||||||| ||||||| |||| ||||||||| ||||||||||    
T  27238571 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatagggtgcaaaatcgcacaattggcaaactataggagggaaaagtacaa 27238472  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  27238471 ttaagccta 27238463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 3353500 - 3353609
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||| | |||||| |||||||||| |  |||||| ||||||||||||||||| ||||||| |||| |||||| || |||||| |||    
T  3353500 aaatcagaaagggggaaact-atagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaa 3353597  T
Q  249 ttaaacctattt 260  Q
     |||||||||||    
T  3353598 ctaaacctattt 3353609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 42673244 - 42673346
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  42673244 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 42673342  T
Q  249 ttaa 252  Q
    ||||    
T  42673343 ttaa 42673346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 53687994 - 53687891
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| | |||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  53687994 aaatcagaaagggggaaaactatagggggtaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 53687895  T
Q  249 ttaa 252  Q
    ||||    
T  53687894 ttaa 53687891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 27238848 - 27238954
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||  || |||||| |||    
T  27238848 aaatcagaaagggggaaaactatagggagcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaa 27238947  T
Q  249 ttaaacc 255  Q
    |||||||    
T  27238948 ttaaacc 27238954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 21896459 - 21896544
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||| ||||||| |||||||| |||||||||||||| |   |||||  ||| |||||||||||| |||||||||||||||||||    
T  21896459 aaatcaaaaatgggaaaaatgatggggtgcaaaatcgctcgtataaaaccatggggtgcaaaatcgcacaattgacaaaatatagg 21896544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 22429544 - 22429632
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggagg 237  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||||||    
T  22429544 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggagg 22429632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 10348747 - 10348850
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||| ||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||| |||| |||||| |||    
T  10348747 aaattagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatatgaggaaaaagtgcaa 10348846  T
Q  249 ttaa 252  Q
    ||||    
T  10348847 ttaa 10348850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 40848909 - 40849022
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| ||||||||||    |||||| |||| |||||||||||| ||||||| |||| |||||  || |||||| |||    
T  40848909 aaatcagaaagggtgaaaactatagggggcaaaatcgcttgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaa 40849008  T
Q  249 ttaaacctattttt 262  Q
    |||| |||||||||    
T  40849009 ttaagcctattttt 40849022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 9026839 - 9026728
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| |||||||| ||| |||||||||||||| ||   ||||  | | |||||||||| | |||||| |||||| |||||||| |||| | |||    
T  9026839 aaatcagaaagggggaaaaagatggggtgcaaaatcgctcaa--aaaataaaggggtgcaaaattgcacaattaacaaaagataggaggaaaaa-tgcaa 9026743  T
Q  249 ttaaacctatttttt 263  Q
    |||||||||||||||    
T  9026742 ttaaacctatttttt 9026728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 48160281 - 48160384
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| ||  ||||| |||    
T  48160281 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagggggggaaagtgcaa 48160380  T
Q  249 ttaa 252  Q
    ||||    
T  48160381 ttaa 48160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 24485127 - 24485034
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaa 242  Q
    |||||||||| ||| ||||  |||||| || ||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||||| ||||    
T  24485127 aaatcagaaaggggaaaaactatagggggcgaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggaggaaaaa 24485034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 24485408 - 24485493
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||| ||||| |||||| |  |||||| |||||||||| || |||||| |||| |||||||||||| ||||||| |||| ||||||    
T  24485408 aaattagaaagggggaatactatagggggcaaaatcgctcatttaaaactatggggtgcaaaatcgcacaattggcaaactatagg 24485493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 36180660 - 36180575
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  ||||||  ||||||||| |  |||||| |||| | |||||||||| |||||||||||| ||||||    
T  36180660 aaatcagaaagggggaaaactataggggtcaaaatcgctcgtttaaaactatgggatgcaaaatcgcacaattgacaaactatagg 36180575  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 3353231 - 3353131
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |  ||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  3353231 aaatcagaaagggggaaaactataggggg--aaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 3353135  T
Q  249 ttaa 252  Q
    ||||    
T  3353134 ttaa 3353131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 22429264 - 22429161
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  ||||||  ||||||||| |  |||||| |||  |||||||| ||| ||||||| ||||||||||| |  |||||| |||    
T  22429264 aaatcagaaagggggaaaactataggggacaaaatcgctcgtttaaaactattgggtgcaaagtcgcacaattggcaaaatataggggagaaaagtgcaa 22429165  T
Q  249 ttaa 252  Q
    ||||    
T  22429164 ttaa 22429161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 42673083 - 42672981
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| ||||||||  |||||| |||||||||  |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  42673083 aaatcataaagggggaaaactatagggggcaaaatcgatcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaa 42672985  T
Q  249 ttaa 252  Q
    ||||    
T  42672984 ttaa 42672981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 47665967 - 47665909
Alignment:
Q  199 atgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaaccta 257  Q
    |||||||||||||||| |||||||||||| |||| | || |||||| ||||||| ||||    
T  47665967 atgaggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagccta 47665909  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 26007259 - 26007202
Alignment:
Q  177 gcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||    
T  26007259 gcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg 26007202  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 42456144 - 42456216
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattg 222  Q
    |||||||||| ||||||| | |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||    
T  42456144 aaatcagaaagggggaaact-atagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattg 42456216  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 53688251 - 53688336
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  |||||| |||||||||| |  || ||| ||||  ||||||||||| ||||||| |||| ||||||    
T  53688251 aaatcagaaagggggaaaactatagggggcaaaatcgctcgttttaaactatggagtgcaaaatcgcacaattggcaaactatagg 53688336  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 23630037 - 23630089
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    |||||||||||| ||||||  ||||| |||||||| |||||| ||||||||||    
T  23630037 ggtgcaaaatcgcacaattaccaaaaaataggaggaaaaagtgcaattaaacc 23630089  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 33829517 - 33829698
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  33829517 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 33829616  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| ||||| ||||    
T  33829617 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcctatatttt 33829698  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 28324733 - 28324791
Alignment:
Q  267 gacctcacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28324733 gaccttacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 28324791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 33829162 - 33828993
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  33829162 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 33829064  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  33829063 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 33828993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 7654496 - 7654599
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| ||||| || | |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  7654496 aaatcagaaagggggaaaactatagggggcaaagtcactcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 7654595  T
Q  249 ttaa 252  Q
    ||||    
T  7654596 ttaa 7654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 10087806 - 10087909
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| || ||| || |||||| |||    
T  10087806 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactaaaggggggaaaagtgcaa 10087905  T
Q  249 ttaa 252  Q
    ||||    
T  10087906 ttaa 10087909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 33974247 - 33974350
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||| | |||    
T  33974247 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaaatgcaa 33974346  T
Q  249 ttaa 252  Q
    ||||    
T  33974347 ttaa 33974350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 22755038 - 22755120
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatata 232  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| | |||||||||| ||||    
T  22755038 aaatcagaaa-ggggaaaactatagggggcaaaatcgctcgtttaaaactatgtggtgcaaaatcgcataattgacaaactata 22755120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 30388364 - 30388418
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaaccta 257  Q
    |||||||||||| ||||||  ||||| ||||| || |||||||||||||||||||    
T  30388364 ggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtacaattaaaccta 30388418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 18241906 - 18241846
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    |||||||||||| |||||| |||||| ||||| || |||||| ||||||| ||| ||||||    
T  18241906 ggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcctttttttt 18241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 33973912 - 33973864
Alignment:
Q  207 caaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    |||||||| |||| ||||||| ||||||||| |||| ||||||||||||    
T  33973912 caaaatcgcacaactgacaaactataggagggaaaaatacaattaaacc 33973864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 258
Target Start/End: Original strand, 2639363 - 2639539
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  2639363 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcgctaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 2639462  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctat 258  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| |||||    
T  2639463 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcctat 2639539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 26841760 - 26841585
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  26841760 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 26841661  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaaccta 257  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| ||||    
T  26841660 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagccta 26841585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 7664354 - 7664240
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||| |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||| ||| |||||| || |||||| |||    
T  7664354 aaatcagaaagggggaaaattatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaa 7664255  T
Q  249 ttaaacctatttttt 263  Q
    |||| ||||||||||    
T  7664254 ttaagcctatttttt 7664240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 7591373 - 7591193
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| |||||  ||||||||||||||||||||   || ||| ||| ||||   |  ||||||||||| |||||||| ||| |||||||||    
T  7591373 caaacattaaatgaagacacgccatcaaaatcagacacatcatcgctaaaacacatgggggcctc-caaatcagaaagggggaaaaagatggggtgcaaa 7591275  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatttttt 263  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  ||||||||||||||| || ||||||    
T  7591274 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtacaattaaatctttttttt 7591193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 18296248 - 18296079
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  18296248 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaaaggggaaaaagatggggtgcaaa 18296150  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  ||||||||||||||    
T  18296149 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtacaattaa 18296079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 2638994 - 2638841
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttc-aaatcagaaatggggaaaatgatagggtgcaa 180  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||||||  ||||     || |||||||||| |||||||| ||| ||||||||    
T  2638994 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtgggggggcctccaaatcagaaagggggaaaaagatggggtgcaa 2638895  T
Q  181 aatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||| |  |||||| |||| |||||||||||| ||||||| ||||| |||||    
T  2638894 aatcgctcgtttaaaaatatggggtgcaaaatcgcacaattggcaaaagatagg 2638841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 8851254 - 8851147
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  8851254 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 8851155  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  8851154 ttaaacct 8851147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 26692502 - 26692395
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||| |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||  || |||||| |||    
T  26692502 aaatcagaaaggggaaaaattatagggagcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagagggaaaaagtgcaa 26692403  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  26692402 ttaaacct 26692395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 26842120 - 26842271
Alignment:
Q  83 aaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaaa 182  Q
    ||||||||||||| ||||| |||||||||||| ||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| ||||||||||    
T  26842120 aaacattaaatgaagacacgtcatcaaaatcatacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaaa 26842219  T
Q  183 tcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||| |  ||||||  ||| |||||||||||| ||||||| ||||| |||||    
T  26842220 tcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagatagg 26842271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 7591731 - 7591885
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||||||   |||    | ||||||||||| ||||||||  ||  ||||||||    
T  7591731 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtagggggcctccaaatcagaaagggggaaaaaaatgaggtgcaaa 7591830  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggag 236  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||||||||| |||||||    
T  7591831 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattgacaaaagataggag 7591885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 7664621 - 7664724
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||  | |||||| |||    
T  7664621 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaa 7664720  T
Q  249 ttaa 252  Q
    ||||    
T  7664721 ttaa 7664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 8851531 - 8851633
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  8851531 aaatcagaaa-ggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 8851629  T
Q  249 ttaa 252  Q
    ||||    
T  8851630 ttaa 8851633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 26692768 - 26692874
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||  || |||||| |||    
T  26692768 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaa 26692867  T
Q  249 ttaaacc 255  Q
    |||||||    
T  26692868 ttaaacc 26692874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 6325298 - 6325398
Alignment:
Q  152 tcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaatta 251  Q
    ||||||||||||||||  |||||| |||||||||| |  |||| | ||||||||||||||||| ||||||| |||| |||| | || |||||| ||||||    
T  6325298 tcagaaatggggaaaactatagggggcaaaatcgctcgtttaatactatgaggtgcaaaatcgcacaattggcaaactatatgggggaaaagtgcaatta 6325397  T
Q  252 a 252  Q
    |    
T  6325398 a 6325398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 18296603 - 18296707
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  18296603 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 18296702  T
Q  182 atcgc 186  Q
    |||||    
T  18296703 atcgc 18296707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 5379905 - 5380022
Alignment:
Q  147 tcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtac 246  Q
    |||||||||||| |||| |||  |||||| |||||||||| |  || ||| || | |||||||||||| |||||||  ||| |||||| || |||||| |    
T  5379905 tcaaatcagaaagggggtaaaatatagggggcaaaatcgcacgttttaaactacggggtgcaaaatcgcacaattggtaaactataggggggaaaagtgc 5380004  T
Q  247 aattaaacctatttttta 264  Q
    |||||| |||||||||||    
T  5380005 aattaagcctatttttta 5380022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 29230446 - 29230490
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagaca 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  29230446 acacacgacaaacattaaatgaagacacatcatcaaaatcagaca 29230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 29343745 - 29343789
Alignment:
Q  74 acacatgacaaacattaaatgatgacacatcatcaaaatcagaca 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  29343745 acacacgacaaacattaaatgaagacacatcatcaaaatcagaca 29343789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 16911217 - 16911319
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  ||||||  ||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| ||| ||||| |||    
T  16911217 aaatcagaaagggggaaaactataggggacaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg-ggcgaaagtgcaa 16911315  T
Q  249 ttaa 252  Q
    ||||    
T  16911316 ttaa 16911319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 17851083 - 17850981
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| |||||||   |||||| |||||||||| | ||||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  17851083 aaatcataaagggggaaatctatagggggcaaaatcgctc-gttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 17850985  T
Q  249 ttaa 252  Q
    ||||    
T  17850984 ttaa 17850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 30191030 - 30190915
Alignment:
Q  149 aaatcagaaatgggg-aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| |||| |||| ||| |||||||||||||| ||   ||||  | | |||||||||||| ||||||| ||||| ||||| || |||||| ||    
T  30191030 aaatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgca 30190931  T
Q  248 attaaacctatttttt 263  Q
    ||||| ||||||||||    
T  30190930 attaagcctatttttt 30190915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 37720307 - 37720207
Alignment:
Q  150 aatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaat 249  Q
    ||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| ||||    
T  37720307 aatcagaaa-ggggaaaactataggg-gcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaat 37720210  T
Q  250 taa 252  Q
    |||    
T  37720209 taa 37720207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 41790860 - 41790968
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  |||||| |||||||||| |  || |||  ||| || ||||||||| ||||||| ||||||||||| || |||||| |||    
T  41790860 aaatcagaaagagggaaaactatagggggcaaaatcgctcgttttaaacaatggggggcaaaatcgcacaattggcaaaatataggggggaaaagtgcaa 41790959  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  41790960 ttaagccta 41790968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 7979671 - 7979588
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatata 232  Q
    ||||||||||  |||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||    
T  7979671 aaatcagaaagagggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgtcaaactata 7979588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 40469676 - 40469791
Alignment:
Q  149 aaatcagaaatgggg-aaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| |||| |||| ||| |||||||||||||| ||   ||||  | | |||||||||||| ||||||  ||||| ||||| || |||||| ||    
T  40469676 aaatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtgca 40469775  T
Q  248 attaaacctatttttt 263  Q
    ||||||||| ||||||    
T  40469776 attaaacctttttttt 40469791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 5378769 - 5378659
Alignment:
Q  147 tcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtac 246  Q
    ||||||||||||  ||| |||  |||||| |||||||||| |  || ||| || | |||||||||||| ||||||| |||| |||||| || |||||| |    
T  5378769 tcaaatcagaaagagggtaaaatatagggggcaaaatcgcacgttttaaactacggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgc 5378670  T
Q  247 aattaaaccta 257  Q
    |||||| ||||    
T  5378669 aattaagccta 5378659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 18750097 - 18750159
Alignment:
Q  172 agggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||    
T  18750097 agggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg 18750159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 41790596 - 41790491
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| | ||||||  |||||| |||||||||| |  || |||  ||| |||||||||||| |||||||||||| |||||| || |||| | |||    
T  41790596 aaatcagaaaggaggaaaactatagggggcaaaatcgctcgttttaaacaatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaaatgcaa 41790498  T
Q  249 ttaaacc 255  Q
    |||||||    
T  41790497 ttaaacc 41790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 38490789 - 38490862
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattg 222  Q
    |||||| ||| |||||||| ||| |||||||||||||| |  ||||||  ||||| |||||||||| |||||||    
T  38490789 aaatcataaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaccatgagatgcaaaatcgcacaattg 38490862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 52335200 - 52335133
Alignment:
Q  258 ttttttaatgacctcacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 325  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52335200 ttttttaaggagcttacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 52335133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 39691948 - 39692064
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| |||||||| |||||||||||||||| | |  ||||||  ||| |||||||||||| ||||||||||||||||||| || |||||| |||    
T  39691948 aaatcagaaagggggaaaaagatagggtgcaaaatcacacgtttaaaaacatggggtgcaaaatcgcacaattgacaaaatataggggggaaaagtgcaa 39692047  T
Q  249 ttaaacctattttttaa 265  Q
    |||| ||| ||| ||||    
T  39692048 ttaagcctttttcttaa 39692064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 6002410 - 6002240
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    ||||||||||||||  |||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  6002410 caaacattaaatgaaaacacgtcatcaaaatcagacacatcatcactaaaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 6002311  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||  ||||||||||||| ||||| |  |||||| |||||||    
T  6002310 atcgctcgtttaaaaacatggggtgcaaaatcacacaattgacaaaagataggggtgaaaagtgcaattaa 6002240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 28634105 - 28634214
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||  |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  28634105 aaatcagaaagggggaaaactatagggggcaaaatcgatcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 28634204  T
Q  249 ttaaacctat 258  Q
    ||||||||||    
T  28634205 ttaaacctat 28634214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 6703566 - 6703458
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||||||||||||||| |||||||  ||| ||||||||| |||||| |||    
T  6703566 aaatcagaaaaggggaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattggtaaactataggaggaaaaagtgcaa 6703467  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  6703466 ttaagccta 6703458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 26815067 - 26815175
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||| |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||| ||| |||||| || |||||| |||    
T  26815067 aaatcagaaagggggaaaattatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaa 26815166  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  26815167 ttaagccta 26815175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 13918552 - 13918449
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||||| |||||| |||    
T  13918552 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggaggaaaaagtgcaa 13918453  T
Q  249 ttaa 252  Q
    ||||    
T  13918452 ttaa 13918449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 48104784 - 48104677
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  48104784 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgccaaactataggggggaaaagtgcaa 48104685  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  48104684 ttaaacct 48104677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 50615569 - 50615671
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| || |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  50615569 aaatcagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 50615667  T
Q  249 ttaa 252  Q
    ||||    
T  50615668 ttaa 50615671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 50623397 - 50623499
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| || |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  50623397 aaatcagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 50623495  T
Q  249 ttaa 252  Q
    ||||    
T  50623496 ttaa 50623499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 49284581 - 49284412
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  49284581 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 49284483  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  49284482 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 49284412  T

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Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 49284936 - 49285082
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  49284936 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 49285035  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaa 228  Q
    |||||    ||||||  ||| |||||||||||| ||||||| |||||    
T  49285036 atcgcttgtttaaaaacatggggtgcaaaatcgcacaattggcaaaa 49285082  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 9347232 - 9347129
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  9347232 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 9347133  T
Q  249 ttaa 252  Q
    ||||    
T  9347132 ttaa 9347129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 20480273 - 20480171
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  20480273 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 20480175  T
Q  249 ttaa 252  Q
    ||||    
T  20480174 ttaa 20480171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 26814800 - 26814697
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| ||||||  | |||||| |||    
T  26814800 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaa 26814701  T
Q  249 ttaa 252  Q
    ||||    
T  26814700 ttaa 26814697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 42611291 - 42611184
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||  |||||||||| |  |||||| ||||||||||||||||| ||||||| |||| |||| | || |||||| |||    
T  42611291 aaatcagaaagggggaaaactataggaggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaa 42611192  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  42611191 ttaaacct 42611184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 50526420 - 50526523
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  50526420 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaa 50526519  T
Q  249 ttaa 252  Q
    ||||    
T  50526520 ttaa 50526523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 42611562 - 42611668
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| ||||||||||    |||||| ||||||||||||||||| |||||||||||| |||||| |  |||||| |||    
T  42611562 aaatcagaaaggggaaaaactatagggggcaaaatcgcttgtttaaaactatgaggtgcaaaatcgcacaattgacaaactataggggagaaaagtgcaa 42611661  T
Q  249 ttaaacc 255  Q
    |||||||    
T  42611662 ttaaacc 42611668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 46823949 - 46823843
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||  ||||||||||| ||||||| |||| |||||| || |||||| |||    
T  46823949 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggagtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 46823850  T
Q  249 ttaaacc 255  Q
    |||||||    
T  46823849 ttaaacc 46823843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 50430029 - 50430135
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  50430029 aaatcagaaagggagaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 50430128  T
Q  249 ttaaacc 255  Q
    |||||||    
T  50430129 ttaaacc 50430135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 6002774 - 6002915
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaataca-cggggaattttcaaatcagaaatggggaaaatgatagggtgcaa 180  Q
    |||||||||||||| |||||||||||||||||||||||||||   || ||| |||  ||||    | ||||||||||| |||||||| |||  |||||||    
T  6002774 caaacattaaatgaagacacatcatcaaaatcagacacatcatcactaaaacacatgggggggcctccaaatcagaaagggggaaaaagatgaggtgcaa 6002873  T
Q  181 aatcgcccagttaaaagtatgaggtgcaaaatcgaacaattg 222  Q
    |||||| |  ||||||  ||| |||||||||||| |||||||    
T  6002874 aatcgctcgtttaaaaacatggggtgcaaaatcgcacaattg 6002915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 28633826 - 28633717
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||| | || |||||| |||    
T  28633826 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgtacaattggcaaactataagggggaaaagtgcaa 28633727  T
Q  249 ttaaacctat 258  Q
    |||| |||||    
T  28633726 ttaagcctat 28633717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 32162991 - 32163099
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  ||| || |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  32162991 aaatcagaaagggggaaaactataaggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 32163090  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  32163091 ttaagccta 32163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 27172221 - 27172119
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  27172221 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaa 27172123  T
Q  249 ttaa 252  Q
    ||||    
T  27172122 ttaa 27172119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 48105064 - 48105167
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||| | || |||||| |||    
T  48105064 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaa 48105163  T
Q  249 ttaa 252  Q
    ||||    
T  48105164 ttaa 48105167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 19008696 - 19008806
Alignment:
Q  147 tcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtac 246  Q
    |||||||||||| ||||||||| |||||| ||||||| || |  || ||| |||| |||||||||||| |||||||  ||| |||||| || |||||| |    
T  19008696 tcaaatcagaaagggggaaaattatagggggcaaaattgcacgttttaaactatggggtgcaaaatcgcacaattgcgaaactataggggggaaaagtgc 19008795  T
Q  247 aattaaaccta 257  Q
    |||||| ||||    
T  19008796 aattaagccta 19008806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 44911131 - 44911023
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  || |||  ||| |||||||||||| ||||||| ||||||||||| ||  ||||| |||    
T  44911131 aaatcagaaagggggaaaactatagggggcaaaatcgctcgttttaaacaatggggtgcaaaatcgcacaattggcaaaatatagggggggaaagtgcaa 44911032  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  44911031 ttaagccta 44911023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 48191266 - 48191369
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  48191266 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaa-gatggggtgcaaa 48191364  T
Q  182 atcgc 186  Q
    |||||    
T  48191365 atcgc 48191369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 50949217 - 50949161
Alignment:
Q  199 atgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    |||||||||||||||| ||||||| || | ||||||||| |||||||||||||||||    
T  50949217 atgaggtgcaaaatcgcacaattggcagactataggagggaaaagtacaattaaacc 50949161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 999216 - 999111
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| | |||||||||| |||||||||||| |||||| || |||||| |||    
T  999216 aaatcagaaa-ggagaaaactatagggggcaaaatcgctcgtttaaaactatgggatgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 999119  T
Q  249 ttaaacct 256  Q
    ||||||||    
T  999118 ttaaacct 999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 21687131 - 21687028
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| | ||||||  |||||| |||||||||| |  |||||| |||| ||||||||||   |||||||||||| |||||| || |||||| |||    
T  21687131 aaatcagaaaggaggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaattacacaattgacaaactataggggggaaaagtgcaa 21687032  T
Q  249 ttaa 252  Q
    ||||    
T  21687031 ttaa 21687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 33085723 - 33085674
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||    
T  33085723 ggtgcaaaatcaaacaattgacaaaatatagggtggaaaagtacaattaa 33085674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 13918826 - 13918918
Alignment:
Q  160 ggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||||||  |||||| |||||||||  |  |||||| ||||||||||||||||| ||||||| |||| ||||||  | |||||| |||||||    
T  13918826 ggggaaaactatagggggcaaaatcgttcgtttaaaactatgaggtgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaa 13918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 50429762 - 50429659
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| |  |||||  |||||| |||||||||| |  |||||| ||||||||||||||||| ||||||  |||| ||||   || ||||||||||    
T  50429762 aaatcagaaaggatgaaaactatagggggcaaaatcgctcgtttaaaactatgaggtgcaaaatcgcacaattagcaaattataaaggggaaaagtacaa 50429663  T
Q  249 ttaa 252  Q
    ||||    
T  50429662 ttaa 50429659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 50949513 - 50949624
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  || |||  ||||| |||||||||| |||||||||||| |||||| ||  ||||| |||    
T  50949513 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgttttaaacaatgagatgcaaaatcgcacaattgacaaactatagggggggaaagtgcaa 50949612  T
Q  249 ttaaacctattt 260  Q
    |||  |||||||    
T  50949613 ttatgcctattt 50949624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 20371143 - 20371059
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  | |||| |||||||||| |  |||||| |||| |||||||||| | |||||||||||| ||||||    
T  20371143 aaatcagaaa-ggggaaaactacagggggcaaaatcgctcgtttaaaactatggggtgcaaaattgcacaattgacaaactatagg 20371059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 8108773 - 8108717
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctatt 259  Q
    |||||||||||| |||||| |||||| |||||  | |||||| ||||||||||||||    
T  8108773 ggtgcaaaatcgcacaattaacaaaagatagggaggaaaagtgcaattaaacctatt 8108717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 24671339 - 24671283
Alignment:
Q  172 agggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaa 228  Q
    ||||||||||||||| || ||||||| |||  ||||||||||| ||||||| |||||    
T  24671339 agggtgcaaaatcgctcaattaaaaggatggagtgcaaaatcgcacaattggcaaaa 24671283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 116048 - 116106
Alignment:
Q  267 gacctcacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116048 gaccttacattagagttagaatgagacaatgatgtcaaagtataagaaaaatgtgtgat 116106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 44599662 - 44599492
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  44599662 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 44599563  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  44599562 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 44599492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 17157073 - 17156970
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| || |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  17157073 aaatcagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 17156974  T
Q  249 ttaa 252  Q
    ||||    
T  17156973 ttaa 17156970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 20419272 - 20419387
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  20419272 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 20419371  T
Q  249 ttaaacctatttttta 264  Q
    |||| ||| |||||||    
T  20419372 ttaagcctttttttta 20419387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 18864073 - 18863967
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  18864073 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 18863974  T
Q  249 ttaaacc 255  Q
    |||||||    
T  18863973 ttaaacc 18863967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 13863486 - 13863334
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | |||||||||||  ||||||| ||| |||||||||    
T  13863486 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagagggaaaaagatggggtgcaaa 13863387  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| |||||    
T  13863386 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagatagg 13863334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 18864350 - 18864457
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| ||||||||||||||||| ||||||| |||| |||||| || ||||||||||    
T  18864350 aaatcagaaagggggaaaactatagggggcaaaatcgctcttttaaaactatgaggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtacaa 18864448  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  18864449 ttaagccta 18864457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 22740262 - 22740159
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  22740262 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 22740163  T
Q  249 ttaa 252  Q
    ||||    
T  22740162 ttaa 22740159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 44600017 - 44600186
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||| ||||||||| ||||| |||||||||||||||||||||   || |||| || ||||    | ||||||||||| |||||||| ||| |||||||||    
T  44600017 caaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 44600115  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaa 252  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| ||||| |  |||||| |||||||    
T  44600116 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 44600186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 10533140 - 10533032
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  10533140 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 10533041  T
Q  249 ttaaaccta 257  Q
    |||| ||||    
T  10533040 ttaagccta 10533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 20418994 - 20418886
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  20418994 aaatcagaaagggtgaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 20418895  T
Q  249 ttaaaccta 257  Q
    |||||||||    
T  20418894 ttaaaccta 20418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 3205041 - 3205144
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| || | |||||||||||| |||||||||||| |||||| || |||||| |||    
T  3205041 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactacggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 3205140  T
Q  249 ttaa 252  Q
    ||||    
T  3205141 ttaa 3205144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 37888939 - 37888836
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  37888939 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 37888840  T
Q  249 ttaa 252  Q
    ||||    
T  37888839 ttaa 37888836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 37889207 - 37889321
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| || |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  37889207 aaatcagaaagggagaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 37889306  T
Q  249 ttaaacctatttttt 263  Q
    |||| ||||| ||||    
T  37889307 ttaagcctatatttt 37889321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 265
Target Start/End: Original strand, 13863839 - 13864020
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaataca-cggggaattttcaaatcagaaatggggaaaatgatagggtgcaa 180  Q
    |||||||||||||| ||||  |||||||||||||||||||||   || ||| ||| |||||  |   ||||||||||| |||||||| ||| ||||||||    
T  13863839 caaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaacacatcggggcctc--caaatcagaaagggggaaaaagatggggtgcaa 13863936  T
Q  181 aatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacctattttttaa 265  Q
    |||||| |  |||||| |||| ||||| |||||| ||||||| ||||| ||||| |  |||||| ||||||| |||  |||||||    
T  13863937 aatcgctcgtttaaaaatatggggtgc-aaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagccttatttttaa 13864020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 13744181 - 13744283
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  13744181 aaatcaaaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 13744279  T
Q  249 ttaa 252  Q
    ||||    
T  13744280 ttaa 13744283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 37972344 - 37972447
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||| |||| ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  37972344 aaatctgaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 37972443  T
Q  249 ttaa 252  Q
    ||||    
T  37972444 ttaa 37972447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 38826861 - 38826964
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||| ||  |  |||||| ||||||||||||||||| |||||||||||| |||||| || |||| | |||    
T  38826861 aaatcagaaagggggaaaactatagggggcaaaaccgttcgtttaaaactatgaggtgcaaaatcgcacaattgacaaactataggggggaaaaatgcaa 38826960  T
Q  249 ttaa 252  Q
    ||||    
T  38826961 ttaa 38826964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 22740550 - 22740643
Alignment:
Q  160 ggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaac 254  Q
    ||||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||||||||    
T  22740550 ggggaaaactatagggagcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaaac 22740643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 9035240 - 9035344
Alignment:
Q  149 aaatcagaaatggg-gaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| ||| |||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| |||||| || |||||| ||    
T  9035240 aaatcagaaaggggagaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgca 9035339  T
Q  248 attaa 252  Q
    |||||    
T  9035340 attaa 9035344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 42418976 - 42419087
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgagg-tgcaaaatcgaacaattgacaaaatataggaggcaaaagtaca 247  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| || ||||||| || ||||||| |||| |||||| || |||||| ||    
T  42418976 aaatcagaaagggggaaaactatagggggcaaaatcgctcgtttaaaactatgggggtgcaaaaacgcacaattggcaaactataggggg-aaaagtgca 42419074  T
Q  248 attaaacctattt 260  Q
    |||||||||||||    
T  42419075 attaaacctattt 42419087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 48359424 - 48359323
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||| | |||||| | |||||||| |  |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||    
T  48359424 aaatcagaaagggggaaact-atagggggtaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaa 48359327  T
Q  249 ttaa 252  Q
    ||||    
T  48359326 ttaa 48359323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 36527447 - 36527383
Alignment:
Q  191 ttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacct 256  Q
    |||||| |||| |||||||||||| |||||||||||| |||||| || |||||| |||||||||||    
T  36527447 ttaaaactatggggtgcaaaatcgcacaattgacaaactatagg-ggaaaaagtgcaattaaacct 36527383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 37972066 - 37971953
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||| ||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| || ||| |  |||||| |||    
T  37972066 aaatcagaaaggggaaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactacaggggagaaaagtgcaa 37971967  T
Q  249 ttaaacctattttt 262  Q
    |||| |||| ||||    
T  37971966 ttaagcctaatttt 37971953  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 8643711 - 8643787
Alignment:
Q  146 ttcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattg 222  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |  |||| |  ||| |||||||||||| |||||||    
T  8643711 ttcaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaataacatggggtgcaaaatcgcacaattg 8643787  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 13741663 - 13741560
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| |||||||  ||| |||||| || |||| | |||    
T  13741663 aaatcagaaagtgggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggtaaactataggggggaaaaatgcaa 13741564  T
Q  249 ttaa 252  Q
    ||||    
T  13741563 ttaa 13741560  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 46816256 - 46816367
Alignment:
Q  146 ttcaaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagta 245  Q
    |||||| |||||| ||| |||||||| |||| ||||||||| |  |||||| |||| |||||||||||| | |||||  |||| ||||  || ||||||     
T  46816256 ttcaaaccagaaaggggaaaaatgatggggtacaaaatcgctcgtttaaaaatatggggtgcaaaatcgcataattggtaaaagatagcgggaaaaagtg 46816355  T
Q  246 caattaaaccta 257  Q
    ||||||| ||||    
T  46816356 caattaagccta 46816367  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 48359606 - 48359707
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  || ||| |||| |||||||||||| |||||||  ||| |||||| || |||||| |||    
T  48359606 aaatcagaaagggggaaaactatagggggcaaaatcgctcgttttaaactatgtggtgcaaaatcgcacaattggtaaactatagg-ggaaaaagtgcaa 48359704  T
Q  249 tta 251  Q
    |||    
T  48359705 tta 48359707  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 3204773 - 3204688
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||||||||  |||||||  |||||| ||||||| || |  |||||| |||| |||||||||||| ||||||| |||| ||||||    
T  3204773 aaatcagaaagagggaaaactatagggggcaaaattgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagg 3204688  T

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Target: scaffold0328 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 6676 - 6828
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||| |||||||||||||||||||||   || ||| ||| ||||    | ||||||||||| |||||||| ||| |||||||||    
T  6676 caaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaa 6775  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    ||||| |  ||||||  ||| |||||||||||| ||||||| ||||| |||||    
T  6776 atcgctcgtttaaaaacatggggtgcaaaatcgcacaattggcaaaagatagg 6828  T

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Target: scaffold0328; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 6324 - 6186
Alignment:
Q  82 caaacattaaatgatgacacatcatcaaaatcagacacatcagtcctgaaatacacggggaattttcaaatcagaaatggggaaaatgatagggtgcaaa 181  Q
    |||||||||||||| ||||  |||||||||||||||||||||   || ||| ||| ||||   |  ||||||||||| |||||||| ||| |||||||||    
T  6324 caaacattaaatgaagacaagtcatcaaaatcagacacatcatcactaaaacacatgggggcctc-caaatcagaaagggggaaaaagatggggtgcaaa 6226  T
Q  182 atcgcccagttaaaagtatgaggtgcaaaatcgaacaatt 221  Q
    ||||| || |||||| |||| |||| ||||||| ||||||    
T  6225 atcgctcatttaaaaatatggggtgtaaaatcgcacaatt 6186  T

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Target: scaffold0460 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 436 - 333
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||| |  |||||| |||| | |||||||||| |||||||||||| |||||| || |||||| |||    
T  436 aaatcagaaaaggggaaaactatagggggcaaaatcgctcgtttaaaactatgggatgcaaaatcgcacaattgacaaactataggggggaaaagtgcaa 337  T
Q  249 ttaa 252  Q
    ||||    
T  336 ttaa 333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 38643 - 38746
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||||||| ||||||||  |||||| |||||||||  |  |||| | |||| |||||||||||| ||||||| |||| |||||| || |||||| |||    
T  38643 aaatcagaaagggggaaaactatagggggcaaaatcgttcgtttaagactatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaa 38742  T
Q  249 ttaa 252  Q
    ||||    
T  38743 ttaa 38746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 185222 - 185325
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    ||||||||||  |||||||  |||||| |||||||||| |  |||||| |||| |||||||||||| ||||||| |||| ||||||  | |||||| |||    
T  185222 aaatcagaaagagggaaaactatagggggcaaaatcgctcgtttaaaactatggggtgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaa 185321  T
Q  249 ttaa 252  Q
    ||||    
T  185322 ttaa 185325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 19992 - 20100
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaa 248  Q
    |||||| ||| ||||||| | |||||| ||||||||| |   |||||| |||| || ||||||||| |||||||||||| |||| | || |||||| |||    
T  19992 aaatcaaaaagggggaaact-atagggggcaaaatcgtcagtttaaaactatggggggcaaaatcgcacaattgacaaactataagggggaaaagtgcaa 20090  T
Q  249 ttaaacctat 258  Q
    |||| |||||    
T  20091 ttaagcctat 20100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 50178 - 50094
Alignment:
Q  149 aaatcagaaatggggaaaatgatagggtgcaaaatcgcccagttaaaagtatgaggtgcaaaatcgaacaattgacaaaatatagg 234  Q
    |||||||||| ||||||||  | |||| |||||||||| |  |||||| |||| |||||||||| | |||||||||||| ||||||    
T  50178 aaatcagaaa-ggggaaaactacagggggcaaaatcgctcgtttaaaactatggggtgcaaaattgcacaattgacaaactatagg 50094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 183415 - 183364
Alignment:
Q  203 ggtgcaaaatcgaacaattgacaaaatataggaggcaaaagtacaattaaacc 255  Q
    |||||||||||| ||||||||||||| ||||| || |||||| ||||||||||    
T  183415 ggtgcaaaatcgtacaattgacaaaagatagg-gggaaaagtgcaattaaacc 183364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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