View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0401_low_1 (Length: 513)

Name: NF0401_low_1
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0401_low_1
NF0401_low_1
[»] chr8 (1 HSPs)
chr8 (28-451)||(29157267-29157690)
[»] chr2 (9 HSPs)
chr2 (28-182)||(2596226-2596380)
chr2 (28-182)||(2581537-2581691)
chr2 (223-340)||(2583668-2583785)
chr2 (267-396)||(2596498-2596628)
chr2 (28-155)||(2589151-2589278)
chr2 (178-247)||(2596431-2596500)
chr2 (225-286)||(2584987-2585051)
chr2 (178-232)||(2581743-2581797)
chr2 (53-98)||(2584824-2584869)
[»] chr7 (2 HSPs)
chr7 (214-396)||(46769773-46769964)
chr7 (53-141)||(46769615-46769703)
[»] chr3 (2 HSPs)
chr3 (28-130)||(21642431-21642533)
chr3 (28-126)||(21620765-21620863)
[»] chr6 (1 HSPs)
chr6 (37-158)||(30399351-30399472)
[»] chr4 (2 HSPs)
chr4 (36-98)||(35767245-35767307)
chr4 (53-98)||(19359417-19359462)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 28 - 451
Target Start/End: Original strand, 29157267 - 29157690
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 127  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157267 caaagaggactagaattatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 29157366  T
Q  128 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttaggttttttcggggacattggaagcaactcacaatttaataattgtt 227  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29157367 tgggatgattggaggaaaggaagaaatgagctttttggtgctgcaatagctttaggtttcttcggggacattggaagcaactcacaatttaataattgtt 29157466  T
Q  228 ttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157467 ttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatct 29157566  T
Q  328 ctcttctaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtgtcatgtcatgggtatatgtctat 427  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29157567 ctcttttaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtttcatgtcatgggtatatgtctat 29157666  T
Q  428 ggaaagcctattcttcttagttga 451  Q
    ||||||||||||||||||||||||    
T  29157667 ggaaagcctattcttcttagttga 29157690  T

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Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 2596226 - 2596380
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 127  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||||||||||||||||||||     
T  2596226 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgtcgaaagtttggtttctgacatttagaaagcacgtcaagacattta 2596325  T
Q  128 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 182  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2596326 tgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2596380  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 2581537 - 2581691
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 127  Q
    ||||||||||||||| |||| ||  |||| ||||||||| || |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  2581537 caaagcggactagaattatccatgaaatagaatggttctttgtcaaggtttatgttgaaagcttggtttctgacatttagaaagcacgtcaagacatttg 2581636  T
Q  128 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 182  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2581637 tgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2581691  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
Q  223 ttgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc 322  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2583668 ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc 2583767  T
Q  323 catctctcttctaatttt 340  Q
    |||||||||| |||||||    
T  2583768 catctctcttttaatttt 2583785  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 396
Target Start/End: Original strand, 2596498 - 2596628
Alignment:
Q  267 tgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttc 366  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||||||    
T  2596498 tgtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttc 2596597  T
Q  367 agtttttccttgtttctttt-atgtaattgt 396  Q
    ||||||||| |||||||||| ||||||||||    
T  2596598 agtttttccatgtttcttttaatgtaattgt 2596628  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 2589151 - 2589278
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 127  Q
    ||||||||||||||| |||| ||  |||||||||||||||| ||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||    
T  2589151 caaagcggactagaattatcaatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgatatttagaaagcacgtcaagacatttg 2589250  T
Q  128 tgggatggttggaggaaaggaagaaagg 155  Q
    |||||||||| |||||||  ||||||||    
T  2589251 tgggatggttagaggaaaaaaagaaagg 2589278  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 2596431 - 2596500
Alignment:
Q  178 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgt 247  Q
    ||||||||| ||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2596431 tttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttataactcttctgt 2596500  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
Q  225 gttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgc 286  Q
    |||||||||||||||||||   |||||||||||||| ||||| |||||||||||| |||||||||    
T  2584987 gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc 2585051  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 2581743 - 2581797
Alignment:
Q  178 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgtt 232  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||||| |||||||    
T  2581743 tttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 2584824 - 2584869
Alignment:
Q  53 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 98  Q
    ||||||||||||||||| ||||| || ||||||||| |||||||||    
T  2584824 aatacaatggttctctgtcaaggcttatgttgaaagtttggtttct 2584869  T

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Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 214 - 396
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
Q  214 atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcat 310  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | |||||||||||    
T  46769773 atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat 46769872  T
Q  311 ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt 396  Q
    ||||||| ||| ||||||| |     | ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||    
T  46769873 ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt 46769964  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 46769615 - 46769703
Alignment:
Q  53 aatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggttggag 141  Q
    |||||| |||||||||||||||||||  |||||||| || ||||||  ||||||||||||| ||||||||||||||||||||| |||||    
T  46769615 aatacattggttctctgccaaggtttacgttgaaagttttgtttcttacatttagaaagcatgtcaagacatttgtgggatggctggag 46769703  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 21642533 - 21642431
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 127  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||    
T  21642533 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttg 21642434  T
Q  128 tgg 130  Q
    |||    
T  21642433 tgg 21642431  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 21620863 - 21620765
Alignment:
Q  28 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacattt 126  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  21620863 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 21620765  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 30399351 - 30399472
Alignment:
Q  37 ctagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggt 136  Q
    |||||| |||||||  |||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||| | ||||    
T  30399351 ctagaattatcgatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttgtgcgctggt 30399450  T
Q  137 tggaggaaaggaagaaaggagg 158  Q
    | || ||||||||||| |||||    
T  30399451 tagatgaaaggaagaatggagg 30399472  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 35767245 - 35767307
Alignment:
Q  36 actagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttct 98  Q
    ||||||||||  |||  |||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  35767245 actagaactactgatagaatacactggttctctaccaaggtttatgtcgaaagcttggtttct 35767307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 19359417 - 19359462
Alignment:
Q  53 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 98  Q
    |||| |||||||||||| ||||| || |||||||||||||||||||    
T  19359417 aataaaatggttctctgtcaaggcttatgttgaaagcttggtttct 19359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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