View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0401_low_13 (Length: 207)
Name: NF0401_low_13
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0401_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 34899924 - 34899738
Alignment:
| Q |
1 |
acatctctctttagttcatctctcgctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttcctt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899924 |
acatctctctttagttcttctctcgctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttcctt |
34899825 |
T |
|
| Q |
101 |
ccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgat |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899824 |
ccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgat |
34899738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1843 times since January 2019
Visitors: 3091