View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0401_low_2 (Length: 456)
Name: NF0401_low_2
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0401_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 90 - 456
Target Start/End: Complemental strand, 29157920 - 29157554
Alignment:
| Q |
90 |
atcatataaaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaa |
189 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29157920 |
atcatataaaactaccactacatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaa |
29157821 |
T |
|
| Q |
190 |
catttatctttttgccacactgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagacatagactcattatgaaaaccactactaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29157820 |
catttatctttttgccacactgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagacatagacccattacgaaaaccactactaa |
29157721 |
T |
|
| Q |
290 |
tatgcatctggccaatccatcaggacaacgtcaactaagaagaataggctttccatagacatatacccatgacatgacaaaaatccaaattacataaaag |
389 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||| |
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| T |
29157720 |
tatgcatctggccaatccatcaagacaacgtcaactaagaagaataggctttccatagacatatacccatgacatgaaacaaaccacaattacataaaag |
29157621 |
T |
|
| Q |
390 |
aaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaa |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29157620 |
aaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattaaaagagagatggcatgtaa |
29157554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 28624755 - 28624907
Alignment:
| Q |
110 |
catagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacac |
209 |
Q |
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|||||| ||||||||| ||||||| |||| ||||||||||||||| |||||||||||||| |||| || ||||||||||||| ||||||| |||||| |
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| T |
28624755 |
catagattaaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaatcaaatatttgaaacatttttctttttcccacac |
28624854 |
T |
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| Q |
210 |
tgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagaca |
262 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28624855 |
tgctttaccaaagaattaaactaacagcctgtacgggagtagtaaattagaca |
28624907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 2596618 - 2596546
Alignment:
| Q |
384 |
taaaagaaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaa |
456 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
2596618 |
taaaagaaacatggaaaaactgaaagtcgaatggttgaattggatgaaaaattaaaagagagatagaatgtaa |
2596546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 11982143 - 11982217
Alignment:
| Q |
98 |
aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
172 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11982143 |
aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
11982217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 18770468 - 18770394
Alignment:
| Q |
98 |
aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
172 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18770468 |
aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
18770394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 46769962 - 46769901
Alignment:
| Q |
377 |
aattacataaaagaaacaaggaaaaactgaaa-gttgaatggttgaattggatgaaaaatta |
437 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||| |
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| T |
46769962 |
aattacattgaagaaagaaggaaaaactgaaaagttgaatgattgaattggatgtaaaatta |
46769901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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