View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0401_low_3 (Length: 404)
Name: NF0401_low_3
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0401_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 40138000 - 40138361
Alignment:
| Q |
28 |
cagagcagacagtgcccgacacagaaatcattgcaacattgattaaaaacgccacaaacaaagcgaatccactctcatagaggaaatatctacatgcttc |
127 |
Q |
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| T |
40138000 |
cagagcagacagtgcccgacacagaaatcattgcaacattgattaaaaacgccacaaacaaagcgaatccgctctcatagaggaaatatctacatgcttc |
40138099 |
T |
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| Q |
128 |
ctgcacaatatagcagataggtttctatgtgatgtataaataagcaaagcaaaccccaagatctatcaatgcctacatagaagttaaatgtgcaattagg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40138100 |
ctgcacaatatagcagataggtttctatgtgatgtataaataagcaaagcaaaccccaagatctatcaatgcctgcatagaagttaaatgtgcaattagg |
40138199 |
T |
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| Q |
228 |
cacagttttgaatatagtttaagctgtctcattttatagccatagctaaatttattaatttcctgagtggcttacattgatgcctctcacagatttaggt |
327 |
Q |
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| T |
40138200 |
cacagttttgaatatagtttaagctgtctcattttatagccatagctaaatttattaatttcctgagtggcttacattgatgcctctcacagatttaggt |
40138299 |
T |
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| Q |
328 |
acttttctagatagcacaagagcagagtggaggaaaagattgtgcctgcattttgtccaaag |
389 |
Q |
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| T |
40138300 |
acttttctagatagcacaagagcagagtggaggaaaagattgtgcctgcattttgtccaaag |
40138361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 40125946 - 40126042
Alignment:
| Q |
36 |
acagtgcccgacacagaaatcattgcaacattgattaaaaacgccacaaacaaagcgaatccactctcatagaggaaatatctacatgcttcctgca |
132 |
Q |
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| T |
40125946 |
acagtgccagtcacagaaatcattgcaacattgattagaaatgcaacaaacaacgcgaaaccactctcaatgagaaagtatctgcatgcatcctgca |
40126042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 40126190 - 40126243
Alignment:
| Q |
324 |
aggtacttttctagatagcacaagagcagagtggaggaaaagattgtgcctgca |
377 |
Q |
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||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40126190 |
aggtatttttcgagatagcactagagcagagtggaggaaaagattgtgcctgca |
40126243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 21311445 - 21311391
Alignment:
| Q |
324 |
aggtacttttctagatagcacaagagcagagtggaggaaaagattgtgcctgcat |
378 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21311445 |
aggtatttttcgagatagcactagagcagagtggaggaaaagattgtgcctgcat |
21311391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 38350885 - 38350832
Alignment:
| Q |
325 |
ggtacttttctagatagcacaagagcagagtggaggaaaagattgtgcctgcat |
378 |
Q |
| |
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|||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38350885 |
ggtatttttcgagatagcactagagcagagtggaggaaaagattgtgcctgcat |
38350832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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