View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0401_low_6 (Length: 376)
Name: NF0401_low_6
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0401_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 39123668 - 39123360
Alignment:
| Q |
9 |
agcagactccaaacaatgtatatataaaaaactttccaaaaattcttcacagttttacatataattatcacattaatatgtgaagtgaacacagagttac |
108 |
Q |
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| T |
39123668 |
agcagactccaaacaatgtatatataaaaaactttccaaaaattcttcacagttttacatataattatcacattaatatgtgaagtgaacacagagttac |
39123569 |
T |
|
| Q |
109 |
acgccttaaaatgagtagcatatttaaacagtttcattcttctcccttataaatccaaaggaactgatttgaccctgcttttttcttttgtaagatatta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123568 |
acgccttaaaatgagtagcatatttaaacagtttcattcttctcccttataaatccaaaggaactgatttgaccctgcttttttcttttgtaagatatta |
39123469 |
T |
|
| Q |
209 |
aaccaagtcaaattgaataaaatgatggccatgtctcactactactctccctatgactgttactacttactatcaacgtgattgggcattgacaagcaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123468 |
aaccaagtcaaattgaataaaatgatggccatgtctcactactactctccctatgactgttactacttactatcaacgtgattgggcattgacaagcaag |
39123369 |
T |
|
| Q |
309 |
acacaggtt |
317 |
Q |
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||||||||| |
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| T |
39123368 |
acacaggtt |
39123360 |
T |
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