View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0401_low_9 (Length: 277)
Name: NF0401_low_9
Description: NF0401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0401_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 45546522 - 45546703
Alignment:
| Q |
1 |
tctggtccatgtgtcaatgtcactgcatccaaaatagattcaaataaagtagnnnnnnntgcttcaaacttaaaaactaccaagtattgtatatattaac |
100 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
45546522 |
tctggtccatgtgtcagtgtcacttcatccaaaatagattcaaataaagtagaaaaaaatgcttcaaacttaaaaactaccaagtatagtatatattaac |
45546621 |
T |
|
| Q |
101 |
tcttgcttcaaacaaaatgatatgatacctggatatggttcgacgttaggtgagttttgttcatcgttctccccttccacat |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45546622 |
tcttgcttcaaacaaaatgatatgatacctggatatggttcaacgttaggtgagttttgttcatcgttctccccttccacat |
45546703 |
T |
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