View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_high_15 (Length: 411)

Name: NF0403_high_15
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_high_15
NF0403_high_15
[»] chr1 (12 HSPs)
chr1 (228-372)||(27994536-27994681)
chr1 (11-104)||(27994803-27994895)
chr1 (228-370)||(28004271-28004420)
chr1 (16-95)||(28004562-28004641)
chr1 (11-100)||(27995443-27995532)
chr1 (14-95)||(28004896-28004977)
chr1 (11-96)||(27995112-27995196)
chr1 (229-290)||(27995245-27995306)
chr1 (235-273)||(28005040-28005078)
chr1 (235-272)||(28005349-28005386)
chr1 (232-274)||(28004711-28004753)
chr1 (64-96)||(28005219-28005251)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 27994681 - 27994536
Alignment:
Q  228 cagacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagca-gaaaaaacactaaacaacat 326  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27994681 cagacagactatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagcatgaaaaaacactaaacaacat 27994582  T
Q  327 ctgattcctaatcccatcagtagaaatgaatgaagaaaccatttca 372  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  27994581 ctgattcctagtcccatcagtagaaacgaatgaagaaaccatttca 27994536  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27994895 - 27994803
Alignment:
Q  11 cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgataggtgtaat 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27994895 cagagacgaacgaagaa-ccattagtaacagtaaatttatcaaattatggtctgaaagaagaaaattataatgaatttaattgataggtgtaat 27994803  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 28004420 - 28004271
Alignment:
Q  228 cagacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagcagaaaaaacactaaacaacatc 327  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||| | |  |||||||||||||||||||||||||    
T  28004420 cagacaggctgtatatagttgtatatttttacaataagtattcactaccttggtatttgaaatatacattgtccgagcagaaaaaacactaaacaacatc 28004321  T
Q  328 tgat-------tcctaatcccatcagtagaaatgaatgaagaaaccattt 370  Q
    ||||       ||||||||||||||||||||| |||| ||||||||||||    
T  28004320 tgattcctgattcctaatcccatcagtagaaacgaataaagaaaccattt 28004271  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 28004641 - 28004562
Alignment:
Q  16 acgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  28004641 acgaacgaagaaaccattagtaacagtaaatttatcaaattatggactgaaataagaaaattataataaatttaattgat 28004562  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 27995532 - 27995443
Alignment:
Q  11 cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgataggtg 100  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||| |   ||||||||||||||||||||||||||||| |||||||    
T  27995532 cagagacgaacgaagaaaccattagtaaaaataaaattatcaaattatagacggaaagaagaaaattataatgaatttaattaataggtg 27995443  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 28004977 - 28004896
Alignment:
Q  14 agacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgat 95  Q
    ||||||| ||||||||||||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||||    
T  28004977 agacgaatgaagaaaccattagtaatagtaaacttattaaattatggactgaaagaagaaaattataatgaatttaattgat 28004896  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 27995196 - 27995112
Alignment:
Q  11 cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgata 96  Q
    |||||| ||||||||||| ||||||||||| ||| ||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  27995196 cagagatgaacgaagaaatcattagtaacaataa-tttatcaaattatgaatttaaagaagaaaattataatgaatttaattgata 27995112  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 27995306 - 27995245
Alignment:
Q  229 agacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaat 290  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||    
T  27995306 agacaggctatatattgttgtatatttttacgataagtatttactttcttgatatttgaaat 27995245  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 28005078 - 28005040
Alignment:
Q  235 gctatatattgttgtatatttttacgataagtattcact 273  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  28005078 gctatgtattgttgtatatttttacgataagtattcact 28005040  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 28005386 - 28005349
Alignment:
Q  235 gctatatattgttgtatatttttacgataagtattcac 272  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28005386 gctatatattgttgtatatttttatgataagtattcac 28005349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 28004753 - 28004711
Alignment:
Q  232 caggctatatattgttgtatatttttacgataagtattcacta 274  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  28004753 caggctgtatatagttgtatacttttacgataagtattcacta 28004711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 28005251 - 28005219
Alignment:
Q  64 gaaagaagaaaattataatgaatttaattgata 96  Q
    ||||||||||||||||||||||||||| |||||    
T  28005251 gaaagaagaaaattataatgaatttaactgata 28005219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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