View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_high_17 (Length: 409)

Name: NF0403_high_17
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_high_17
NF0403_high_17
[»] chr3 (3 HSPs)
chr3 (30-255)||(24087746-24087971)
chr3 (363-398)||(28885446-28885481)
chr3 (271-300)||(24087971-24088000)
[»] chr7 (1 HSPs)
chr7 (361-395)||(43637367-43637401)
[»] chr6 (1 HSPs)
chr6 (361-395)||(32818641-32818675)
[»] chr5 (2 HSPs)
chr5 (361-395)||(38761330-38761364)
chr5 (362-398)||(13760965-13761001)
[»] chr4 (1 HSPs)
chr4 (361-395)||(39121205-39121239)
[»] scaffold0385 (1 HSPs)
scaffold0385 (362-395)||(11840-11873)
[»] chr8 (1 HSPs)
chr8 (362-395)||(33099629-33099662)
[»] chr2 (1 HSPs)
chr2 (363-395)||(18601319-18601351)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 24087746 - 24087971
Alignment:
Q  30 attaccgtatgaaaataataagaaagaaatatcaacacatgatgaatccaacataccgtaacatttttattgagacaaaaataagttactannnnnnnnn 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  24087746 attaccgtatgaaaataataagaaagaaatatcaacacatgatgaatccaacataccgtaacatttttattgagacaaaaataagttacta-tttttttt 24087844  T
Q  130 nacgaaaaaataagtgagttaatgtatacaacttacaagatacaaaatcattacgtcnnnnnnntatacaaaactattttttctggtagtgacaaaacta 229  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||    
T  24087845 tacgaaaaaataagtgagttaatgtatacaacttacaagatacaaaatcattacgtcaaaaatatatataaaactattttttctggtagtgacaaaacta 24087944  T
Q  230 ttgtaaca-tggattcaacgcaaacgt 255  Q
    |||||| | ||||||||||||||||||    
T  24087945 ttgtaatagtggattcaacgcaaacgt 24087971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 28885446 - 28885481
Alignment:
Q  363 accaaacaacccatcaaatctaatctatttctctct 398  Q
    |||||||||||||||||||||| |||||||||||||    
T  28885446 accaaacaacccatcaaatctactctatttctctct 28885481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 24087971 - 24088000
Alignment:
Q  271 tcataaattacatgtttttattaaaggata 300  Q
    ||||||||||||||||||||||||||||||    
T  24087971 tcataaattacatgtttttattaaaggata 24088000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 43637401 - 43637367
Alignment:
Q  361 ataccaaacaacccatcaaatctaatctatttctc 395  Q
    |||||||||||||||||||||||| ||||||||||    
T  43637401 ataccaaacaacccatcaaatctactctatttctc 43637367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 32818641 - 32818675
Alignment:
Q  361 ataccaaacaacccatcaaatctaatctatttctc 395  Q
    |||||||||||||||||||||||| ||||||||||    
T  32818641 ataccaaacaacccatcaaatctactctatttctc 32818675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 38761330 - 38761364
Alignment:
Q  361 ataccaaacaacccatcaaatctaatctatttctc 395  Q
    |||||||||||||||||||||||| ||||||||||    
T  38761330 ataccaaacaacccatcaaatctactctatttctc 38761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 13761001 - 13760965
Alignment:
Q  362 taccaaacaacccatcaaatctaatctatttctctct 398  Q
    |||||||||| |||||||||||| |||||||||||||    
T  13761001 taccaaacaatccatcaaatctactctatttctctct 13760965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 39121239 - 39121205
Alignment:
Q  361 ataccaaacaacccatcaaatctaatctatttctc 395  Q
    |||||||||||||||||||||||| ||||||||||    
T  39121239 ataccaaacaacccatcaaatctactctatttctc 39121205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 11840 - 11873
Alignment:
Q  362 taccaaacaacccatcaaatctaatctatttctc 395  Q
    ||||||||||||||||||||||| ||||||||||    
T  11840 taccaaacaacccatcaaatctactctatttctc 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 33099629 - 33099662
Alignment:
Q  362 taccaaacaacccatcaaatctaatctatttctc 395  Q
    ||||||||||||||||||||||| ||||||||||    
T  33099629 taccaaacaacccatcaaatctactctatttctc 33099662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 18601351 - 18601319
Alignment:
Q  363 accaaacaacccatcaaatctaatctatttctc 395  Q
    |||||||||||||||||||||| ||||||||||    
T  18601351 accaaacaacccatcaaatctactctatttctc 18601319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1198 times since January 2019
Visitors: 3078