View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_high_19 (Length: 396)
Name: NF0403_high_19
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 9106351 - 9106736
Alignment:
| Q |
1 |
caaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106351 |
caaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtg |
9106450 |
T |
|
| Q |
101 |
aagatactcaattcctttttctatactaagaatttgtcgtagctattttgaacaatcgtcacaaaatgatgattctatttaacaattgacatgatcactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9106451 |
aagatactcaattcctttttctatactaagaatttgtcgtagctattttgaacaatcgtcacaaaatgataattctatttaacaattgacatgatcactt |
9106550 |
T |
|
| Q |
201 |
ctgctattgataagcaggagatttagaagattcagtagtgtaatcaaagcaccgtgtgctcctgccatctaattnnnnnnnttatgcaagggttaatttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9106551 |
ctgctattgataagcaggagatttagaagattcagtagtgtaatcaaagcaccgtgtgctcctgccatctaattaaaaaaattatgcaagggttaatttg |
9106650 |
T |
|
| Q |
301 |
ttctaacaaaagaaagtgaccataataaaaattacattatgctcgtagtcggtgtgaaagaaacaaaatataaaatgaaccctatg |
386 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106651 |
ttctaacaaaagaaagtgacgataataaaaattacattatgctcgtagtcggtgtgaaagaaacaaaatataaaatgaaccctatg |
9106736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 9125270 - 9125383
Alignment:
| Q |
6 |
ccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaagat |
105 |
Q |
| |
|
||||| ||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||| |
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| T |
9125270 |
ccaaagtctgaaatttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtcaaagtgaagaattggatggctacaaccctcatgaagat |
9125369 |
T |
|
| Q |
106 |
actcaattcctttt |
119 |
Q |
| |
|
|||||||||||||| |
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|
| T |
9125370 |
actcaattcctttt |
9125383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 9086098 - 9086211
Alignment:
| Q |
6 |
ccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaagat |
105 |
Q |
| |
|
||||| ||||||| |||||| ||||| | |||||| ||||||||||||||||||| ||||||||||| || ||||||||| ||||| | || ||||||| |
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| T |
9086098 |
ccaaagtctgaaatttttggagtgaaggtttcatctagcaaaacattgtgagggttaatgtcaaagtgcaggattggatggctacaaccctcatgaagat |
9086197 |
T |
|
| Q |
106 |
actcaattcctttt |
119 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
9086198 |
actcgattcctttt |
9086211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 8979091 - 8979202
Alignment:
| Q |
5 |
accaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaaga |
104 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||| | | |||||| |
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|
| T |
8979091 |
accaaaatctgaaatttttggagttaatgtgtcatcgagcaaaacattgtgagggttgatgtcaaaatgaaggattgaatgactacaaccctgatgaaga |
8979190 |
T |
|
| Q |
105 |
tactcaattcct |
116 |
Q |
| |
|
|||||||||||| |
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|
| T |
8979191 |
tactcaattcct |
8979202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 9069840 - 9069922
Alignment:
| Q |
44 |
caaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaagatactcaattcctttttctatac |
126 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| |||| | || ||||||||||| ||| ||||| |||||| |
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|
| T |
9069840 |
caaaacattgcgagggttgatgtcaaagtgaataattggatggctacagccctcatgaagatactcgattgcttttgctatac |
9069922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 8861691 - 8861804
Alignment:
| Q |
5 |
accaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaaga |
104 |
Q |
| |
|
||||||||| |||| ||||||||| || |||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||| | || ||| |
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| T |
8861691 |
accaaaatccgaaatttttggcgtaaaggattcatctagcaaaacattgtgagggttgatgtcgaagtgaattattggatggttacaaccgagatgtaga |
8861790 |
T |
|
| Q |
105 |
tactcaattccttt |
118 |
Q |
| |
|
|||||||||||||| |
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|
| T |
8861791 |
tactcaattccttt |
8861804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 9337757 - 9337680
Alignment:
| Q |
3 |
aaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
80 |
Q |
| |
|
||||||||||||| || ||| || ||||| ||||||||| ||| ||||| ||||| |||||||||||||| |||||| |
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|
| T |
9337757 |
aaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaatt |
9337680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 9364616 - 9364539
Alignment:
| Q |
3 |
aaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
80 |
Q |
| |
|
||||||||||||| || ||| || ||||| ||||||||| ||| ||||| ||||| |||||||||||||| |||||| |
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|
| T |
9364616 |
aaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaatt |
9364539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 9257397 - 9257474
Alignment:
| Q |
3 |
aaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
80 |
Q |
| |
|
|||||||||| || || |||||| || || |||||||| ||| ||||| ||||| ||||||||||||||||||||| |
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|
| T |
9257397 |
aaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaatt |
9257474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 8927145 - 8927061
Alignment:
| Q |
28 |
tgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttcgtgaagatactcaat |
112 |
Q |
| |
|
|||| ||||||||| ||| |||||||| || ||||| ||||||||||||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
8927145 |
tgaaattgtcatctaacaagacattgtggggattgatatcaaagtgaagaattctatgatcacaaccttggtgaagatactcaat |
8927061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 9087492 - 9087560
Alignment:
| Q |
201 |
ctgctattgataagcaggagatttagaagattcagtagtgtaatcaaagcaccgtgtgctcctgccatc |
269 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||| ||||||| | | ||||||||||||||| |
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|
| T |
9087492 |
ctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtatgtgctcctgccatc |
9087560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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