View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_high_7 (Length: 449)
Name: NF0403_high_7
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_high_7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 89 - 449
Target Start/End: Complemental strand, 33491567 - 33491203
Alignment:
| Q |
89 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgccaaaa |
188 |
Q |
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| T |
33491567 |
tcatcaagtgttggaagaaaaccttaggtttgtcttgtaagtaaaccaaaagtaaaaaaaaaataaagctaaactacaattatggttaatagtgccaaaa |
33491468 |
T |
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| Q |
189 |
ttgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaatgtaatattaacaacaccacatgtttt |
288 |
Q |
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| T |
33491467 |
ttgtagttaattacgtgcaatggatgataaacagagttgcgacaactttttatattcataaccattcacttaatgtaatattaacaacaccacatgtttt |
33491368 |
T |
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| Q |
289 |
aattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaattagt---attagatcaaacacaa |
385 |
Q |
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| T |
33491367 |
aattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaactcttaaattagtattattagatcaaacacaa |
33491268 |
T |
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| Q |
386 |
gaagggttagggagctagcgggtagcgttttgatgatattggggttgg-caatgtcacatgacat |
449 |
Q |
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| T |
33491267 |
gaaggattagggagctagcgggtagcgctttgatgacattgtggttggccaatgtcacatgacat |
33491203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 89 - 403
Target Start/End: Complemental strand, 33413140 - 33412830
Alignment:
| Q |
89 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgc-caaa |
187 |
Q |
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| T |
33413140 |
tcatcaagtgttggaaaaataccttaggtttgtcttgtgactaaaccaaaagtaaaaaaagg--aaagctaaactacaattatggttaatagtgctcaaa |
33413043 |
T |
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| Q |
188 |
attgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaatgtaatattaacaacaccacatgttt |
287 |
Q |
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| T |
33413042 |
atcgtagttaattgcatgcaatggatgataaac-gagttgcggcaactttttagattcattaaccatcactgaacgtaat--taaccataccacatattt |
33412946 |
T |
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| Q |
288 |
taattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaag-caaaaaccctcaaattagtattagatcaaacacaag |
386 |
Q |
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| T |
33412945 |
taattgtgttaaccattcaattttttatcgaattttgtgggtcagccattaaaaggcttcaagccaagaaccctcaaattagtattagatcaaa-tcaag |
33412847 |
T |
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| Q |
387 |
aagggttagggagctag |
403 |
Q |
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| T |
33412846 |
aagggttagagagctag |
33412830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 403
Target Start/End: Complemental strand, 33420273 - 33419967
Alignment:
| Q |
89 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgc-caaa |
187 |
Q |
| |
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||||||||||||||||||| |||| |||||||||| || ||| |||||||||| ||| |||||| ||||||||||||||||||||| |||| |
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| T |
33420273 |
tcatcaagtgttggaagaataccttaggtttgtctcatgagtgaaccaaaagtaaaaaaaaattaa-gctaaattacaattatggttaatagtgctcaaa |
33420175 |
T |
|
| Q |
188 |
attgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattca-taatcattcacttaatgtaatattaacaacaccacatgtt |
286 |
Q |
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| T |
33420174 |
attgtagttaattacgtgcaattgatgataaa-tgagttgcgacacctttatatattcattaaccatccattaaacgta--attaaccataacacataat |
33420078 |
T |
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| Q |
287 |
ttaattgtgttaaccattcaattttttgtcgaa-ttttgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaattagtattagatcaaacacaa |
385 |
Q |
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||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||| || || | |||||||||| |||||||||||||||| |
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| T |
33420077 |
ttaattgtgttaaccattcaattatttgtcgaatttttttgtgtcaaccattaaaaggc----aggaata---ctcaaattagcattagatcaaacacaa |
33419985 |
T |
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| Q |
386 |
gaagggttagggagctag |
403 |
Q |
| |
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||| | |||| ||||||| |
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| T |
33419984 |
gaatgattagagagctag |
33419967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 388
Target Start/End: Original strand, 28812598 - 28812629
Alignment:
| Q |
357 |
ccctcaaattagtattagatcaaacacaagaa |
388 |
Q |
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| T |
28812598 |
ccctcaaattagtattagatcaaacacaagaa |
28812629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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