View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_low_1 (Length: 682)

Name: NF0403_low_1
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_low_1
NF0403_low_1
[»] chr6 (1 HSPs)
chr6 (30-672)||(6011631-6012273)


Alignment Details
Target: chr6 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 30 - 672
Target Start/End: Original strand, 6011631 - 6012273
Alignment:
Q  30 gaaccgtccattttttagcacgttcaatttttgaattacaatggttatgactatttaagtaaactcctgtcatggtgtctctgagttttcctttttcatt 129  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6011631 gaactgtccatattttagcacgttcaatttttgaattacaatggttatgactatttaagtaaactcctgtcatggtgtctctgagttttcatttttcatt 6011730  T
Q  130 aaccaatgaacattaatttaacttctttgcagcattgaaatctacaagcataacaaagaagaaagaatagctagaacctggggaacaactgctccaggat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011731 aaccaatgaacattaatttaacttctttgcagcattgaaatctacaagcataacaaagaagaaagaatagctagaacctggggaacaactgctccaggat 6011830  T
Q  230 tgccttatgttgaggaggtcattgctccagctggaaattggcttattggaggagatttggaagtgctaaaacctatcaaatacaatgatggtcttgataa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011831 tgccttatgttgaggaggtcattgctccagctggaaattggcttattggaggagatttggaagtgctaaaacctatcaaatacaatgatggtcttgataa 6011930  T
Q  330 ctacaggctatctcccaagcaacttcgggaagaatttgataggcgtaaagctgatgcagttttcgcctttcagttaagaaatcctgtgcataacggtcat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011931 ctacaggctatctcccaagcaacttcgggaagaatttgataggcgtaaagctgatgcagttttcgcctttcagttaagaaatcctgtgcataacggtcat 6012030  T
Q  430 gccttgttaatgaacgatactcgtcaacgcctactagacatgggttacaaaaatccgattttattgcttcatcctcttggaggtttcacaaaggttgacg 529  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012031 gccttgttaatgaacgatactcgtcaacgtctactagacatgggttacaaaaatccgattttattgcttcatcctcttggaggtttcacaaaggttgacg 6012130  T
Q  530 atgttcccttagatgtcaggatggagcaacatagcaaggtaatttccatcattttttctcatatggcgtcgagtaagaatcaattttgtttaatatcggt 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012131 atgttcccttagatgtcaggatggagcaacatagcaaggtaatttccatcattttttctcatatggcgtcgagtaagaatcaattttgtttaatatcggt 6012230  T
Q  630 gctatagagtagcggtttttgaacacatcgctattgctctgtg 672  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6012231 gctatagagtagcggtttttgaacacatcgctattgctctgtg 6012273  T

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