View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_10 (Length: 425)
Name: NF0403_low_10
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 19785663 - 19785277
Alignment:
| Q |
14 |
aggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaa |
113 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785663 |
aggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaa |
19785564 |
T |
|
| Q |
114 |
atgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785563 |
atgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaa |
19785464 |
T |
|
| Q |
214 |
acatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccatgcacctttgtgctccctgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19785463 |
acatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccacgcacctttgtgctccctgt |
19785364 |
T |
|
| Q |
314 |
ggttgtggcgttgttttttatttattcttcttcttagagaaaaagggtttgatggttgcaaacgcttatttttggatccagatttccttt |
403 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
19785363 |
ggttgtggcgttgttttttatttattcttgttcttagagcaaaagggtttgatggttgcaagcgctta---ttggatccagatttccttt |
19785277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 19795924 - 19796175
Alignment:
| Q |
14 |
aggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaa |
113 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||| || |
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| T |
19795924 |
aggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatcagcgaa |
19796023 |
T |
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| Q |
114 |
atgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaa |
213 |
Q |
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||||||||||||| |||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
19796024 |
atgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctcttccttcaaa |
19796123 |
T |
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| Q |
214 |
acatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtca |
265 |
Q |
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|| ||||| || ||||| | ||||||| ||||| |||||||||||||||| |
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| T |
19796124 |
acgtgagcaccttctttctcaaccttagctctcgctgccacctcttcagtca |
19796175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 15835231 - 15835478
Alignment:
| Q |
14 |
aggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaa |
113 |
Q |
| |
|
||||||| | || ||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15835231 |
aggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatcagcaaa |
15835330 |
T |
|
| Q |
114 |
atgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaa |
213 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835331 |
atgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaa |
15835430 |
T |
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| Q |
214 |
acatgagcggtttgtttctgagccttagccctcgccgccacctcttca |
261 |
Q |
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| ||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
15835431 |
gcgtgagcagtttctttctgagccttagctctcgcagccacctcttca |
15835478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 47712825 - 47713019
Alignment:
| Q |
16 |
gaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaaat |
115 |
Q |
| |
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||||| ||||| ||||| |||||||| ||| |||| || || ||||||| | ||||| |||||||||||| || ||| ||||| |||||||||||||||| |
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| T |
47712825 |
gaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagcaaaat |
47712924 |
T |
|
| Q |
116 |
gatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
210 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| | | || || |||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
47712925 |
gatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctctttcttc |
47713019 |
T |
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