View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0403_low_11 (Length: 425)
Name: NF0403_low_11
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 19785666 - 19785277
Alignment:
| Q |
11 |
caaaggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagc |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19785666 |
caaaggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagc |
19785567 |
T |
|
| Q |
111 |
aaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19785566 |
aaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
19785467 |
T |
|
| Q |
211 |
aaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccatgcacctttgtgctccc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19785466 |
aaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccacgcacctttgtgctccc |
19785367 |
T |
|
| Q |
311 |
tgtggttgtggcgttgttttttatttattcttcttcttagagaaaaagggtttgatggttgcaaacgcttatttttggatccagatttccttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
19785366 |
tgtggttgtggcgttgttttttatttattcttgttcttagagcaaaagggtttgatggttgcaagcgctta---ttggatccagatttccttt |
19785277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 19795921 - 19796175
Alignment:
| Q |
11 |
caaaggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagc |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19795921 |
caaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatcagc |
19796020 |
T |
|
| Q |
111 |
aaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
210 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
19796021 |
gaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctcttccttc |
19796120 |
T |
|
| Q |
211 |
aaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtca |
265 |
Q |
| |
|
||||| ||||| || ||||| | ||||||| ||||| |||||||||||||||| |
|
|
| T |
19796121 |
aaaacgtgagcaccttctttctcaaccttagctctcgctgccacctcttcagtca |
19796175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 15835228 - 15835478
Alignment:
| Q |
11 |
caaaggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagc |
110 |
Q |
| |
|
|||||||||| | || ||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15835228 |
caaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatcagc |
15835327 |
T |
|
| Q |
111 |
aaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
210 |
Q |
| |
|
|||||||| ||||||| ||| |||||| |||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835328 |
aaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
15835427 |
T |
|
| Q |
211 |
aaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttca |
261 |
Q |
| |
|
||| | ||||| |||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15835428 |
aaagcgtgagcagtttctttctgagccttagctctcgcagccacctcttca |
15835478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 47712820 - 47713019
Alignment:
| Q |
11 |
caaaggaagactcaacagaagggcaccatttagcaacaaggctgatttttgtgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagc |
110 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||| ||| |||| || || ||||||| | ||||| |||||||||||| || ||| ||||| ||||||||||| |
|
|
| T |
47712820 |
caaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagc |
47712919 |
T |
|
| Q |
111 |
aaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
210 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||| | | || || |||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
47712920 |
aaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctctttcttc |
47713019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1238 times since January 2019
Visitors: 3078