View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_13 (Length: 423)
Name: NF0403_low_13
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_13 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 400
Target Start/End: Original strand, 11797723 - 11798093
Alignment:
| Q |
30 |
catgcttcatagacagatggatcaaactcataatcaattcttttcgtttcgattaacannnnnnnnnnngtttattgtgtttctaaatgcaatgagaatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11797723 |
catgcttcatagacagatggatcaaactcataattagttcttgtcgtttcgattaacatttttttatttatttattgtgtttctaaatgcaatgagaatt |
11797822 |
T |
|
| Q |
130 |
gaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccact |
229 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11797823 |
gaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccact |
11797922 |
T |
|
| Q |
230 |
caaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttctt |
329 |
Q |
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|||||||||||||| || ||||||| | ||||| ||| |||||| |||||||||| |||| ||||| || || ||||| ||||||||||||||| |
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| T |
11797923 |
caaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttctt |
11798022 |
T |
|
| Q |
330 |
ggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcacttttttag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11798023 |
ggacgctaccgcacaatcatacttgcttctctcatctatattatggttagttcaattcttcacttttttag |
11798093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 121 - 382
Target Start/End: Original strand, 11701770 - 11702031
Alignment:
| Q |
121 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
220 |
Q |
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||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
|
| Q |
221 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgat |
320 |
Q |
| |
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||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| || |||||||| |||||| |
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| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgat |
11701969 |
T |
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| Q |
321 |
tcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttc |
382 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
11701970 |
tcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttc |
11702031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 124 - 376
Target Start/End: Original strand, 11675880 - 11676132
Alignment:
| Q |
124 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
223 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
11675880 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11675979 |
T |
|
| Q |
224 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattct |
323 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| || || ||||| ||||||||| |
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| T |
11675980 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattct |
11676079 |
T |
|
| Q |
324 |
tttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
376 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
11676080 |
tttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11676132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 124 - 376
Target Start/End: Original strand, 11684159 - 11684411
Alignment:
| Q |
124 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
223 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
11684159 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11684258 |
T |
|
| Q |
224 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattct |
323 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| || || ||||| ||||||||| |
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| T |
11684259 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattct |
11684358 |
T |
|
| Q |
324 |
tttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
376 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
11684359 |
tttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11684411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 132 - 377
Target Start/End: Original strand, 11695984 - 11696229
Alignment:
| Q |
132 |
aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca |
231 |
Q |
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|||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
|
| Q |
232 |
aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttgg |
331 |
Q |
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|||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||| ||||| || || ||||| ||||||||||||||||| |
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| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttgg |
11696183 |
T |
|
| Q |
332 |
acgctaccgcacaatcatacttgcttctctcatctatattttggtt |
377 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
11696184 |
acgctaccgcacaatcatgcttgcttctctcatctatatattggtt |
11696229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 152 - 396
Target Start/End: Original strand, 11778983 - 11779227
Alignment:
| Q |
152 |
tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct |
251 |
Q |
| |
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|||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
11778983 |
tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct |
11779082 |
T |
|
| Q |
252 |
gctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatac |
351 |
Q |
| |
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||||||||||| ||| ||||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
11779083 |
gctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcatac |
11779182 |
T |
|
| Q |
352 |
ttgcttctctcatctatattttggttagttcaattcttcactttt |
396 |
Q |
| |
|
|||||||||| |||||| | |||||| |||| |||||||||||| |
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|
| T |
11779183 |
ttgcttctcttatctatgtattggttggttctgttcttcactttt |
11779227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 121 - 396
Target Start/End: Original strand, 16415 - 16690
Alignment:
| Q |
121 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
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| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
|
| Q |
221 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgat |
320 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||| |||||| |
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| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgat |
16614 |
T |
|
| Q |
321 |
tcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcactttt |
396 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||| |||| |||||||||||| |
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|
| T |
16615 |
tcttttcttggacgctatcacacaatcatacttgcttctcttatctatatattggttggttctgttcttcactttt |
16690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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