View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_18 (Length: 397)
Name: NF0403_low_18
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 68 - 369
Target Start/End: Complemental strand, 33491284 - 33490982
Alignment:
| Q |
68 |
tattagatcaaacacaagaagggttagggagctagcgggtagcgttttgatgatattggggttggc-aatgtcacatgacattggcactccaatatcatc |
166 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
33491284 |
tattagatcaaacacaagaaggattagggagctagcgggtagcgctttgatgacattgtggttggccaatgtcacatgacattggcaccccaatatcatc |
33491185 |
T |
|
| Q |
167 |
aaagtgctacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33491184 |
aaagtgctacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttgattatatatagaaatg |
33491085 |
T |
|
| Q |
267 |
tagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaattcctctaaagaaattattacatgct |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33491084 |
tagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaattcctgtaaagaaattattacatgct |
33490985 |
T |
|
| Q |
367 |
gat |
369 |
Q |
| |
|
||| |
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|
| T |
33490984 |
gat |
33490982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 179 - 332
Target Start/End: Complemental strand, 33419974 - 33419821
Alignment:
| Q |
179 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33419974 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
33419875 |
T |
|
| Q |
279 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33419874 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
33419821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 218 - 369
Target Start/End: Original strand, 28812655 - 28812806
Alignment:
| Q |
218 |
tcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagac |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
28812655 |
tcaagaactaacttgatgagcataagaaggttggtcatatatagaaatgtagcttccttgacacttctgtaaatcattaaggtctgcaagattatgagac |
28812754 |
T |
|
| Q |
318 |
aagactcccacaacagcaccaaattcctctaaagaaattattacatgctgat |
369 |
Q |
| |
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|||||||||||||||||||||| | ||| ||||||| || |||||| |||| |
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|
| T |
28812755 |
aagactcccacaacagcaccaattccctgcaaagaaactactacatgatgat |
28812806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28812543 - 28812629
Alignment:
| Q |
1 |
ttaatgatattaattatgtttgtatgttaatatcttctatgctactcttttatctccctcaaattagtattagatcaaacacaagaa |
87 |
Q |
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|
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| T |
28812543 |
ttaatgatattaattatgtttgtatgttaatatcttctatgctactcttttatctccctcaaattagtattagatcaaacacaagaa |
28812629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 33412837 - 33412742
Alignment:
| Q |
179 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
278 |
Q |
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|
|||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33412837 |
agagctagtaaagattaaaa-tatcatgccaacaattgatcaagaactaacttgatgagcataagaa---tggttatatatagaaatgtagcttccttga |
33412742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 33412875 - 33412830
Alignment:
| Q |
56 |
ccctcaaattagtattagatcaaacacaagaagggttagggagctag |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
33412875 |
ccctcaaattagtattagatcaaa-tcaagaagggttagagagctag |
33412830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 33420011 - 33419967
Alignment:
| Q |
58 |
ctcaaattagtattagatcaaacacaagaagggttagggagctag |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||| ||||||| |
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| T |
33420011 |
ctcaaattagcattagatcaaacacaagaatgattagagagctag |
33419967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 3647508 - 3647554
Alignment:
| Q |
133 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccca |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | |||||||||||| |
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|
| T |
3647508 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccca |
3647554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 22435387 - 22435345
Alignment:
| Q |
133 |
caatgtcacatgacattggcactccaatatcatcaaagtgcta |
175 |
Q |
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|
|||||||||||||||||||||| ||||||||| | |||||||| |
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|
| T |
22435387 |
caatgtcacatgacattggcaccccaatatcacccaagtgcta |
22435345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 15057138 - 15057183
Alignment:
| Q |
133 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
178 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||| ||||||||||||| |
|
|
| T |
15057138 |
caatgtcacatgacattgacaccccaatgtcaccaaagtgctaccc |
15057183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 18182537 - 18182492
Alignment:
| Q |
133 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
178 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | ||||||||||| |
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|
| T |
18182537 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc |
18182492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 18182623 - 18182668
Alignment:
| Q |
133 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
178 |
Q |
| |
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|||||||||||||||||||||| ||||| ||| | ||||||||||| |
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|
| T |
18182623 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc |
18182668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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