View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_21 (Length: 373)
Name: NF0403_low_21
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 99 - 373
Target Start/End: Original strand, 40870242 - 40870516
Alignment:
| Q |
99 |
gatgtgtagtcgtaatgctgggtgtgcaccatcaccagggtactaccctagttccaaagtaagcactattagctttgatcaagaatttagaaatctatgg |
198 |
Q |
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| T |
40870242 |
gatgtgtagtcgtaatgctgggggtgcaccatcaccagggtactaccctagttccaaagtaagcactattagctttgatcaagaatttagaaatctatgg |
40870341 |
T |
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| Q |
199 |
ggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatcttcctagttc |
298 |
Q |
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| T |
40870342 |
ggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatctaccaagttc |
40870441 |
T |
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| Q |
299 |
accttattgaagggacatatatacataatcattatctcgataaatatctctcgaaatttcaagcatttcataatt |
373 |
Q |
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| T |
40870442 |
acctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatt |
40870516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 40870173 - 40870213
Alignment:
| Q |
30 |
cctgcctctaattttcttgccatcatcactctgtatggctc |
70 |
Q |
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| T |
40870173 |
cctgcctctaattttcttgccatcatcactctgtatggctc |
40870213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 43100162 - 43100111
Alignment:
| Q |
231 |
attatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
282 |
Q |
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| T |
43100162 |
attaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
43100111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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