View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_22 (Length: 367)
Name: NF0403_low_22
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 19785606 - 19785277
Alignment:
| Q |
13 |
cagatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785606 |
cagatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatc |
19785507 |
T |
|
| Q |
113 |
aacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785506 |
aacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaa |
19785407 |
T |
|
| Q |
213 |
gagtctttgtcagtgagtttccatgcacctttgtgctccctgtggttgtggcgttgttttttatttattcttcttcttagagaaaaagggtttgatggtt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
19785406 |
gagtctttgtcagtgagtttccacgcacctttgtgctccctgtggttgtggcgttgttttttatttattcttgttcttagagcaaaagggtttgatggtt |
19785307 |
T |
|
| Q |
313 |
gcaaacgcttatttttggatccagatttccttt |
345 |
Q |
| |
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|||| |||||| ||||||||||||||||||| |
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| T |
19785306 |
gcaagcgctta---ttggatccagatttccttt |
19785277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 19795983 - 19796175
Alignment:
| Q |
15 |
gatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaa |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| || |||||||| |||||||||| |
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| T |
19795983 |
gatttcaaaaactcgagatccttcttcaaacaatcagcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaa |
19796082 |
T |
|
| Q |
115 |
caagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttcagtca |
207 |
Q |
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||||||||||||| || |||||||||||||||||||||||||| ||||| || ||||| | ||||||| ||||| |||||||||||||||| |
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| T |
19796083 |
caagcttcttagctaatgcaatcctcttctcttccttcaaaacgtgagcaccttctttctcaaccttagctctcgctgccacctcttcagtca |
19796175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 15835288 - 15835478
Alignment:
| Q |
13 |
cagatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatc |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||| |||||| | |||| ||||| |
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| T |
15835288 |
cagatttcaaaaactcaagatccttcttcaaacaatcagcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatc |
15835387 |
T |
|
| Q |
113 |
aacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctgagccttagccctcgccgccacctcttca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
15835388 |
aacaagcttcttagccaaggcaatcctcttctcttccttcaaagcgtgagcagtttctttctgagccttagctctcgcagccacctcttca |
15835478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 47712883 - 47713019
Alignment:
| Q |
16 |
atttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaac |
115 |
Q |
| |
|
|||||||||||| || ||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | | || || ||||| |
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| T |
47712883 |
atttcaaaaactcaatatctttctttaaacaatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaac |
47712982 |
T |
|
| Q |
116 |
aagcttcttagccaaggcaatcctcttctcttccttc |
152 |
Q |
| |
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||||||||||||||| ||||| ||||||||| |||| |
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| T |
47712983 |
aagcttcttagccaatacaatcttcttctctttcttc |
47713019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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