View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_low_26 (Length: 333)

Name: NF0403_low_26
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_low_26
NF0403_low_26
[»] chr2 (12 HSPs)
chr2 (26-323)||(39493225-39493522)
chr2 (126-323)||(39144695-39144892)
chr2 (146-319)||(39425439-39425612)
chr2 (145-305)||(39188659-39188819)
chr2 (207-319)||(39099690-39099802)
chr2 (231-304)||(39604434-39604507)
chr2 (174-289)||(2362812-2362927)
chr2 (170-307)||(39380424-39380561)
chr2 (171-305)||(39371234-39371368)
chr2 (170-305)||(44895037-44895172)
chr2 (170-304)||(39472694-39472828)
chr2 (269-305)||(31606536-31606572)
[»] chr4 (1 HSPs)
chr4 (207-305)||(33152229-33152327)
[»] chr3 (1 HSPs)
chr3 (186-319)||(51576088-51576221)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 39493225 - 39493522
Alignment:
Q  26 agaattaaccaacatgttaaattttgcatcaagtgtatgaagccaacatatcagttcaatttcatgtgtataaatgtggtgatccataacaccatatgaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493225 agaattaaccaacatgttaaattttgcatcaagtgtatgaagccaacatatcagttcaatttcatgtgtataaatgtggtgatccataacaccatatgaa 39493324  T
Q  126 agaaaaataaggcaaattatagatatcttgcctgatattttttctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493325 agaaaaataaggcaaattatagatatcttgcctgatattttatctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtc 39493424  T
Q  226 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtg 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493425 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtg 39493522  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 39144892 - 39144695
Alignment:
Q  126 agaaaaataaggcaaattatagatatcttgcctgatattttttctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtc 225  Q
    ||||||| |||||| ||  |||||||||| || |||||||| | |||||| |||| ||||||||||||||| ||| | |||| |||||||||||||||||    
T  39144892 agaaaaacaaggcagatattagatatcttaccagatattttatttgcaaatcccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtc 39144793  T
Q  226 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtg 323  Q
    |||| ||||||||||| ||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  39144792 caaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtg 39144695  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 146 - 319
Target Start/End: Original strand, 39425439 - 39425612
Alignment:
Q  146 agatatcttgcctgatattttttctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctca 245  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| | || ||||| ||||| ||     
T  39425439 agatatcttgcctgatattttatctgcaaaacccatggccccaaacagctctacagctaagttgtgctgagaaacaagttcgaaaagcttcaaaacttct 39425538  T
Q  246 tcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttc 319  Q
    || || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||  ||||||||||    
T  39425539 tcttcgtcgaaagaaggaaccagtccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttc 39425612  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 39188659 - 39188819
Alignment:
Q  145 tagatatcttgcctgatattttttctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctc 244  Q
    |||||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||  | |||| || |||||||||||||||||| ||||||||||| ||    
T  39188659 tagatatcttaccagatattttatctgcaaaacctaaggccccaaatagctctacgcctatgtcgtactgagaaacaagtccaaaaagctttaaaacatc 39188758  T
Q  245 atcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaacc 305  Q
    ||| |||| |||||| |||||||  ||||||||||| ||||||||||||||||| ||||||    
T  39188759 atcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaacc 39188819  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 39099802 - 39099690
Alignment:
Q  207 ttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccg 306  Q
    |||||||||| | |||  ||||| ||||||||||| ||||| ||||| ||||| ||| ||| |  ||||||||||||||||||||||||||| |||||||    
T  39099802 ttgtgctgagcagcaaacccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccg 39099703  T
Q  307 caactgaattttc 319  Q
    | || ||||||||    
T  39099702 ccaccgaattttc 39099690  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 39604507 - 39604434
Alignment:
Q  231 agctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaac 304  Q
    ||||||||||| ||||| ||||||||||| ||| ||| |||||||||||||| ||||||||||||||| |||||    
T  39604507 agctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaac 39604434  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 2362927 - 2362812
Alignment:
Q  174 aaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagtccat 273  Q
    |||||||| | |||||||||||| |||   || ||||| |||| | |||  ||||| ||||||||||  ||||| ||||||||||| | ||||| |||||    
T  2362927 aaacccatagtcccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaagctttaaaatttcatcttcatcgaaagaagaaaccaatccat 2362828  T
Q  274 aaattgacagaaggag 289  Q
    ||||||||||||||||    
T  2362827 aaattgacagaaggag 2362812  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 39380424 - 39380561
Alignment:
Q  170 tgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagt 269  Q
    ||||||||||| ||||| ||||| ||||| | | || |||||||||| ||| | | |||| ||||  ||||  ||||| ||||||||||| | || || |    
T  39380424 tgcaaaacccagggcccgaaacatctccatagctatcttgtgctgagcaaccaatgcaaaaagctccaaaatttcatcttcatcgaaagaagtaagcaat 39380523  T
Q  270 ccataaattgacagaaggagtagaaaacctagaaccgc 307  Q
    ||||||||||||| ||| |||||||| || ||||||||    
T  39380524 ccataaattgacaaaagcagtagaaatccaagaaccgc 39380561  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 39371368 - 39371234
Alignment:
Q  171 gcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagtc 270  Q
    |||||||||||||  ||||||||||||| | | || ||||||| || ||||| | |||| ||||  ||||  ||||| ||||| ||||| | ||||| ||    
T  39371368 gcaaaacccatggttccaaacagctccatagctatcttgtgctcagcaacaaatgcaaaaagctccaaaagttcatcttcatcaaaagaagtaaccaatc 39371269  T
Q  271 cataaattgacagaaggagtagaaaacctagaacc 305  Q
    ||||| |||||| ||| | ||||||||| ||||||    
T  39371268 cataatttgacaaaagcaatagaaaaccaagaacc 39371234  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 305
Target Start/End: Original strand, 44895037 - 44895172
Alignment:
Q  170 tgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagt 269  Q
    ||||||||| | || || ||| || |||||| | || |||||||||| ||||| | |||| ||||  ||||| ||  | ||||||||||| | || || |    
T  44895037 tgcaaaaccgagggtccgaaaaagttccacagctatcttgtgctgagcaacaaatgcaaaaagctccaaaacttcgccttcatcgaaagaagtaatcaat 44895136  T
Q  270 ccataaattgacagaaggagtagaaaacctagaacc 305  Q
    ||||||||||||| ||| ||||||||||| ||||||    
T  44895137 ccataaattgacaaaagcagtagaaaaccaagaacc 44895172  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 39472694 - 39472828
Alignment:
Q  170 tgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagt 269  Q
    ||||||||||| || || |||||| |||||| | || |||||||||| ||||| | | || ||||  || || ||||| ||||| ||||| | || || |    
T  39472694 tgcaaaacccaaggtccgaaacagttccacagctatcttgtgctgagcaacaaatgcgaagagctccaagacttcatcttcatcaaaagaagtaagcaat 39472793  T
Q  270 ccataaattgacagaaggagtagaaaacctagaac 304  Q
     |||||||||||| ||| ||||||||||| |||||    
T  39472794 tcataaattgacaaaagcagtagaaaaccaagaac 39472828  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 31606536 - 31606572
Alignment:
Q  269 tccataaattgacagaaggagtagaaaacctagaacc 305  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31606536 tccataaattgacggaaggagtagaaaaccaagaacc 31606572  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 33152327 - 33152229
Alignment:
Q  207 ttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaacc 305  Q
    ||||| |||| ||| | |||||| ||||||||||| ||||| ||||| ||||||| |||||  ||||||||||||||||| || |||||||| ||||||    
T  33152327 ttgtgttgagcaacgattccaaaaagctttaaaacttcatcttcatcaaaagatgaaaccaacccataaattgacagaagtagcagaaaacccagaacc 33152229  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 51576221 - 51576088
Alignment:
Q  186 ccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaa 285  Q
    ||||||||||| ||  | || |||||||||| ||||| ||||||   ||| ||||  ||||| | ||| ||| | ||||||| |||||||||||||||||    
T  51576221 ccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatctttatcaaaataaggaaccaatccataaattgacagaa 51576122  T
Q  286 ggagtagaaaacctagaaccgcaactgaattttc 319  Q
    |||| ||| |||| |||||| | || ||||||||    
T  51576121 ggagcagataaccaagaaccaccacggaattttc 51576088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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