View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_low_28 (Length: 330)

Name: NF0403_low_28
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_low_28
NF0403_low_28
[»] chr1 (14 HSPs)
chr1 (102-230)||(43473131-43473259)
chr1 (257-330)||(43473287-43473360)
chr1 (103-181)||(32035195-32035273)
chr1 (108-181)||(32035335-32035408)
chr1 (103-176)||(41770963-41771036)
chr1 (119-179)||(35078079-35078139)
chr1 (103-183)||(39313411-39313491)
chr1 (103-176)||(7731252-7731325)
chr1 (103-176)||(37392464-37392537)
chr1 (102-181)||(7731520-7731600)
chr1 (135-183)||(15142515-15142563)
chr1 (117-181)||(29700529-29700593)
chr1 (133-181)||(31238664-31238712)
chr1 (102-181)||(37392189-37392269)
[»] chr5 (10 HSPs)
chr5 (102-182)||(42859116-42859196)
chr5 (269-330)||(41286629-41286690)
chr5 (103-182)||(13861252-13861331)
chr5 (103-176)||(20405276-20405348)
chr5 (103-176)||(34992093-34992166)
chr5 (103-178)||(22497269-22497344)
chr5 (103-182)||(22554030-22554109)
chr5 (118-154)||(21112002-21112038)
chr5 (103-182)||(31289767-31289846)
chr5 (122-183)||(22498860-22498921)
[»] chr6 (2 HSPs)
chr6 (130-182)||(14911448-14911500)
chr6 (121-183)||(11527452-11527514)
[»] chr8 (2 HSPs)
chr8 (103-186)||(32094985-32095068)
chr8 (102-181)||(37745142-37745221)
[»] chr7 (9 HSPs)
chr7 (102-176)||(19628881-19628955)
chr7 (102-176)||(46735897-46735971)
chr7 (102-176)||(46736531-46736605)
chr7 (103-176)||(46369854-46369927)
chr7 (103-181)||(29530611-29530689)
chr7 (123-176)||(21690145-21690198)
chr7 (103-183)||(42586331-42586411)
chr7 (102-181)||(46370122-46370204)
chr7 (102-176)||(7668136-7668210)
[»] chr2 (6 HSPs)
chr2 (102-176)||(347675-347749)
chr2 (102-176)||(348297-348371)
chr2 (126-176)||(13844583-13844631)
chr2 (127-182)||(20630093-20630148)
chr2 (102-172)||(5602277-5602347)
chr2 (127-183)||(20002118-20002174)
[»] chr4 (7 HSPs)
chr4 (129-182)||(33881562-33881615)
chr4 (102-176)||(14203929-14204003)
chr4 (103-176)||(37082433-37082506)
chr4 (102-181)||(14204555-14204633)
chr4 (103-179)||(2491653-2491729)
chr4 (135-182)||(24551282-24551329)
chr4 (103-183)||(44469022-44469102)
[»] chr3 (10 HSPs)
chr3 (103-168)||(26243367-26243432)
chr3 (103-176)||(4333914-4333987)
chr3 (103-176)||(21631163-21631236)
chr3 (103-168)||(26121184-26121249)
chr3 (102-181)||(12012249-12012328)
chr3 (103-176)||(42371340-42371413)
chr3 (103-183)||(13661617-13661697)
chr3 (123-185)||(32981277-32981339)
chr3 (106-182)||(4148608-4148684)
chr3 (122-182)||(32981594-32981654)
[»] scaffold2013 (1 HSPs)
scaffold2013 (103-176)||(499-572)
[»] scaffold0257 (1 HSPs)
scaffold0257 (128-182)||(21617-21671)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 43473131 - 43473259
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaaactggnnnnnnnnnat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  43473131 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaaactgatttttttttat 43473230  T
Q  202 aattaaggaataaaatattttttattgat 230  Q
    |||||||||||||||||||||||||||||    
T  43473231 aattaaggaataaaatattttttattgat 43473259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 43473287 - 43473360
Alignment:
Q  257 tccacgtagcattgccacatcatttagtatgcacatgtggcattgccacatcaggaccgttaaagaggagttaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43473287 tccacgtagcattgccacatcatttagtatgcacatgtggcattgccacatcaggatcgttaaagaggagttaa 43473360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 32035195 - 32035273
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    ||||||||||||| |||  ||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||||    
T  32035195 aaattaagaagatcatgggttttaaaaaggacaattatgaaattttggaggagtgcgatttttatatattgttaataga 32035273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 32035335 - 32035408
Alignment:
Q  108 aagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    |||||||| |||  ||||||||||||||||||| || |||||||| | || |||||||||||||||||||||||    
T  32035335 aagaagattatgggttttaaaaaggacaattatgaatttttgctgaaatatgatttttatatattgttagtaga 32035408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 41771036 - 41770963
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  41771036 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 41770963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 35078139 - 35078079
Alignment:
Q  119 gatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagta 179  Q
    |||||| ||||||||||| |||||||||||| ||| ||| || ||||||||||||||||||    
T  35078139 gattttaaaaaaggacaactataaaattttggtggggtatgaattttatatattgttagta 35078079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 39313411 - 39313491
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    |||||||| ||||||| | |||||| ||||||  |||| |||||||  |||| | ||||||||||||||||||||||||||    
T  39313411 aaattaaggagataattagttttaataaggacggttatgaaattttattggatttcgatttttatatattgttagtagata 39313491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 7731252 - 7731325
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| | || |  ||||||||||||||||||    
T  7731252 aaattaagaagataatgagttttaataaggattattatgaaattttggtagactttgatttttatatattgtta 7731325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 37392537 - 37392464
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| | || |  ||||||||||||||||||    
T  37392537 aaattaagaagataatgagttttaataaggattattatgaaattttggtagactttgatttttatatattgtta 37392464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 7731520 - 7731600
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatt-tttatatattgttagtaga 181  Q
    ||||||||||||||| ||| |||||| ||||||  |||||||||||||  ||| | ||||| | |||||||||||||||||    
T  7731520 gaaattaagaagatagtgaattttaataaggacggttataaaattttgaaggacttcgattatatatatattgttagtaga 7731600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 15142563 - 15142515
Alignment:
Q  135 aattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    |||||||||| ||| || ||| |||||||||||||||||||||||||||    
T  15142563 aattataaaaatttcctcgagaacgatttttatatattgttagtagata 15142515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 29700529 - 29700593
Alignment:
Q  117 atgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    |||| |||||| ||||| |||||| |||||||| |  | | ||||||||||||||||||||||||    
T  29700529 atgagttttaacaaggaaaattatgaaattttgttaaacttcgatttttatatattgttagtaga 29700593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 31238664 - 31238712
Alignment:
Q  133 acaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    |||||||||||| |||| | |||||||||||||||||| ||| ||||||    
T  31238664 acaattataaaaatttgtttgagtacgatttttatatactgtcagtaga 31238712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 37392269 - 37392189
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatt-tttatatattgttagtaga 181  Q
    ||||||||||||||| ||| |||||| ||||||  |||| ||||||||  ||| | ||||| | |||||||||||||||||    
T  37392269 gaaattaagaagatagtgaattttaataaggacggttatgaaattttgaaggacttcgattatatatatattgttagtaga 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 42859116 - 42859196
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    ||||||||| ||||||||| ||||||||||||  ||| |||||||||||| || | |||||||||||||||||||||||||    
T  42859116 gaaattaaggagataatgagttttaaaaaggaggattgtaaaattttgctagacttcgatttttatatattgttagtagat 42859196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 41286690 - 41286629
Alignment:
Q  269 tgccacatcatttagtatgcacatgtggcattgccacatcaggaccgttaaagaggagttaa 330  Q
    |||||| |||||| ||||||||||||||| |||||||||||  |||||||||||||||||||    
T  41286690 tgccacgtcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaa 41286629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 13861252 - 13861331
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||| |||| |||| |||||  || ||||||||| ||||||||||| | | |||||||||||||||||||||||||    
T  13861252 aaattaaggagatcatgaattttattaaagacaattatgaaattttgctgaacttcgatttttatatattgttagtagat 13861331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 20405276 - 20405348
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| || ||||||||||||||||||    
T  20405276 aaattaagaagataatgagttttaataaggattattatgaaattttggtggacta-gatttttatatattgtta 20405348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 34992166 - 34992093
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  34992166 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 34992093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 22497269 - 22497344
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagt 178  Q
    |||||||  |||| |||| |||||| ||||||||||||||||||||| || | | | |||||||||||||||||||    
T  22497269 aaattaaagagatcatgagttttaataaggacaattataaaattttgttgtacttcaatttttatatattgttagt 22497344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 22554109 - 22554030
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||| |||| |||  |||||  |||||| ||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  22554109 aaattaaggagattatgtgttttagtaaggactattatgaaatttttctggacttcgatttttatatattgttagtagat 22554030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 21112038 - 21112002
Alignment:
Q  118 tgatttttaaaaaggacaattataaaattttgctgga 154  Q
    |||||||||||||||||||||||||||||||| ||||    
T  21112038 tgatttttaaaaaggacaattataaaattttgttgga 21112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 31289846 - 31289767
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||| ||||  ||| |||||| |||||| ||||||||||||  ||||| | | ||||||||| |||||||||||||    
T  31289846 aaattaaggagatcttgagttttaataaggacgattataaaatttcactggacttcaatttttataaattgttagtagat 31289767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 22498860 - 22498921
Alignment:
Q  122 ttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    |||||| ||||||||| || |||||||| || | | |||||||||| |||||||||||||||    
T  22498860 ttttaataaggacaatgatgaaattttgttgtacttcgatttttatttattgttagtagata 22498921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 14911448 - 14911500
Alignment:
Q  130 aggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  14911448 aggacaattataaaattttgctggacttcgatttttatatattgttagtagat 14911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 11527452 - 11527514
Alignment:
Q  121 tttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    ||||||||| |||| ||||||  | |||||| | |||||||||| ||||||||||||||||||    
T  11527452 tttttaaaatggacgattataggaatttgctagggtacgattttcatatattgttagtagata 11527514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 32095068 - 32094985
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaaa 186  Q
    |||||||| |||| |||| |||||| || ||| ||||| ||||||||||||| |  ||||||||||||||||||||||||||||    
T  32095068 aaattaaggagatcatgagttttaataaagactattatgaaattttgctggactttgatttttatatattgttagtagataaaa 32094985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 37745221 - 37745142
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    ||||||||||||||||||| |||||| |||||| | ||| |||||||| |||| |  |||||||||||||||||||||||    
T  37745221 gaaattaagaagataatgagttttaataaggacgactatgaaattttggtggactttgatttttatatattgttagtaga 37745142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 19628955 - 19628881
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  19628955 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 19628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 46735897 - 46735971
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  46735897 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 46735971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 46736531 - 46736605
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  46736531 gaaattaagaagataatgagttttaataaggattattattaaattttggtggactttgatttttatatattgtta 46736605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 46369854 - 46369927
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  46369854 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 46369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 29530611 - 29530689
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    |||||||| |||| |||| |||||| |||||| ||||| ||||||||||  | |  |||||||||||||||||||||||    
T  29530611 aaattaaggagatcatgagttttaataaggacgattatgaaattttgctttactttgatttttatatattgttagtaga 29530689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 21690198 - 21690145
Alignment:
Q  123 tttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||| ||||||||||||||||   |||| |||||||||||||||||||||    
T  21690198 tttaaaaaagacaattataaaatttaaatggactacgatttttatatattgtta 21690145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 42586331 - 42586411
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    |||||||| |||  |||| |||||| ||| || ||||| |||||||||| || | ||||||||||||||||||| ||||||    
T  42586331 aaattaaggagaacatgagttttaataagaacgattattaaattttgctagacttcgatttttatatattgttaatagata 42586411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 46370122 - 46370204
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttt---tatatattgttagtaga 181  Q
    ||||||||||||||| ||| |||||| |||||| ||||| ||||||||  ||| | |||||||   |||||||||||||||||    
T  46370122 gaaattaagaagatagtgaattttaataaggacgattatgaaattttgaaggacttcgattttatatatatattgttagtaga 46370204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 7668136 - 7668210
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |   ||||||||| |||||||    
T  7668136 gaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttaatttttatagattgtta 7668210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 347749 - 347675
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||  |||||||||||||| |||| |  ||||||||||||||||||    
T  347749 gaaattaagaagataatgagttttaataaggattattataaaattttggtggactttgatttttatatattgtta 347675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 348371 - 348297
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  348371 gaaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 348297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 13844583 - 13844631
Alignment:
Q  126 aaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  13844583 aaaaaggacaattataaaattttgtt--agtacaatttttatatattgtta 13844631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 20630093 - 20630148
Alignment:
Q  127 aaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||||||||||||| ||| |||   ||||||||||| |||||||||||||||    
T  20630093 aaaaggacaattataaaaatttactgctatacgatttttacatattgttagtagat 20630148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 5602347 - 5602277
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatatt 172  Q
    ||||| ||||||||||||| |||||| ||||||  |||| |||||||| |||| |  ||||||||||||||    
T  5602347 gaaataaagaagataatgagttttaataaggacggttatgaaattttggtggactttgatttttatatatt 5602277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 20002174 - 20002118
Alignment:
Q  127 aaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    ||||| ||||||||  ||||||| |||||||| ||||||||||| | ||||||||||    
T  20002174 aaaagaacaattatgtaattttggtggagtacaatttttatatactattagtagata 20002118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 33881615 - 33881562
Alignment:
Q  129 aaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  33881615 aaggacaattatgaaattttgttggagaacgatttttatatattgttagtagat 33881562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 14204003 - 14203929
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  14204003 gaaattaagaagataatgagttttaataaggattattatgaaattttgatggactttgatttttatatattgtta 14203929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 37082506 - 37082433
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  37082506 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 37082433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 14204633 - 14204555
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    ||||||||||||||||||| |||||| || ||| ||||| |||||||| |||| |  ||||||||| |||||||||||||    
T  14204633 gaaattaagaagataatgagttttaataaagacgattatgaaattttggtggactttgatttttat-tattgttagtaga 14204555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 2491729 - 2491653
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagta 179  Q
    |||||||| |||| || | |||||| |||||| ||||| |||||||| || | | ||||||||||||||||||||||    
T  2491729 aaattaaggagatcattaattttaataaggacgattatgaaattttggtgtacttcgatttttatatattgttagta 2491653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 24551282 - 24551329
Alignment:
Q  135 aattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||| | |||| |||||||| |||||||||||||||||||||||    
T  24551282 aattataagaatttgttggagtacaatttttatatattgttagtagat 24551329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 44469022 - 44469102
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    ||||||||  ||| |||| ||||||| ||||| ||||| ||||||||||| | | | | ||| ||||||||||||||||||    
T  44469022 aaattaaggtgatcatgagttttaaataggacgattatgaaattttgctgtacttcaactttcatatattgttagtagata 44469102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 26243367 - 26243432
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttata 168  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||||    
T  26243367 aaattgagaagataatgatttttaaaaaggacaattatgaaaatttgttagagtacaatttttata 26243432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 4333987 - 4333914
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  4333987 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 4333914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 21631236 - 21631163
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  21631236 aaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 21631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 26121184 - 26121249
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttata 168  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| |||| | |||||| |||||||||    
T  26121184 aaattgagaagataatgattttcaaaaaggacaattatgaaaatttgttagagtacaatttttata 26121249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 12012328 - 12012249
Alignment:
Q  102 gaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtaga 181  Q
    ||||||||| ||||||||| ||||||  ||||  ||||| |||||||||| || | | ||||||||||||||||||||||    
T  12012328 gaaattaaggagataatgagttttaattaggaggattatgaaattttgctagacttcaatttttatatattgttagtaga 12012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 42371340 - 42371413
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    ||||||||||||||| || |||||| |||||  ||||| |||||||| |||| |  ||||||||||||||||||    
T  42371340 aaattaagaagataacgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 42371413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 13661697 - 13661617
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagata 183  Q
    |||||||  |||| |||| |||||| ||| || | ||| ||||||||||||| | ||||||||||| ||||||||||||||    
T  13661697 aaattaaagagatcatgagttttaataagaacgaatatgaaattttgctggacttcgatttttatacattgttagtagata 13661617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 32981277 - 32981339
Alignment:
Q  123 tttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagataaa 185  Q
    ||||| ||||||||| || |||||||   ||| | ||||||||||||||||||||||||||||    
T  32981277 tttaataaggacaatcatgaaattttaaaggacttcgatttttatatattgttagtagataaa 32981339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 4148608 - 4148684
Alignment:
Q  106 ttaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||  || | | | | |||||||||||||| ||||||    
T  4148608 ttaagaagatcatgagttttaaagaggacaattatgaaattttattgtacttcaacttttatatattgtttgtagat 4148684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 32981594 - 32981654
Alignment:
Q  122 ttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    |||||| || ||| ||||| |||||||| |||| | | |||||||||||||||||||||||    
T  32981594 ttttaataaagacgattatgaaattttgatggattgcaatttttatatattgttagtagat 32981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 572 - 499
Alignment:
Q  103 aaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtta 176  Q
    |||||||||||||||||| |||||| |||||  ||||| ||| |||| |||| |  ||||||||||||||||||    
T  572 aaattaagaagataatgagttttaataaggattattatgaaaatttggtggactttgatttttatatattgtta 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 21671 - 21617
Alignment:
Q  128 aaaggacaattataaaattttgctggagtacgatttttatatattgttagtagat 182  Q
    ||||||||||||||||| |||| || ||||| ||||||||||| ||| |||||||    
T  21671 aaaggacaattataaaaatttgttgtagtacaatttttatataatgtcagtagat 21617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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