View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_3 (Length: 570)
Name: NF0403_low_3
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 30 - 560
Target Start/End: Original strand, 2685342 - 2685872
Alignment:
| Q |
30 |
caatccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaacaattcctatgacacatatcaccacattccttaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685342 |
caatccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaacaattcctatgacacatatcaccacattccttaat |
2685441 |
T |
|
| Q |
130 |
tcccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacaatccaaattcttattcctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2685442 |
ccccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacattccaaattcttattcctc |
2685541 |
T |
|
| Q |
230 |
acacacccatcagacccatctctcaatttccaagcttgttcattcttaggactaaaacctttcacacattgacaaacaggtgaagcatttgtgtcacata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
2685542 |
acacacccatcagacccatctctcaatttccaagcttgttcatttttaggactaaaacctttcacacattgacaaacaggtgaaccatttgtgtcgcata |
2685641 |
T |
|
| Q |
330 |
aaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtatccatgttcgacgttg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685642 |
aaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtatccatgttcgacgttg |
2685741 |
T |
|
| Q |
430 |
aagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtttgatgaaaaattgaaa |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685742 |
aagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtttgatgaaaaattgaaa |
2685841 |
T |
|
| Q |
530 |
actattgaatctgtatcatgttgcatctctg |
560 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
2685842 |
actattgaatctgtatcatgttgcatctctg |
2685872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 34 - 396
Target Start/End: Complemental strand, 36361727 - 36361365
Alignment:
| Q |
34 |
ccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaacaattcctatgacacatatcaccacattccttaattccc |
133 |
Q |
| |
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|||||||||||||||| ||||||||| | | | || ||| |||||||||||||||||||||||||| | ||||| |||||||||||| | | | |
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|
| T |
36361727 |
ccacataacacaaccaattccaccatcaacaatctcaatatttgcataaccagtacaagaacaattccttttacacaaatcaccacattcaaccaaactc |
36361628 |
T |
|
| Q |
134 |
attgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacaatccaaattcttattcctcacac |
233 |
Q |
| |
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|| || | ||||||||||| |||||||| || |||||||||||| ||||| | ||||| |||||||||||||||||||| | |||||||||| || |
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| T |
36361627 |
atactcctattcacaaaaacactacttgtctctggtaacttcacattcaccatatgcaaaaacttatcactctcacaatccaactcattattcctcaaac |
36361528 |
T |
|
| Q |
234 |
acccatcagacccatctctcaatttccaagcttgttcattcttaggactaaaacctttcacacattgacaaacaggtgaagcatttgtgtcacataaacc |
333 |
Q |
| |
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| |||||||| ||||||||||| ||||| ||||| | |||||| || | ||| ||||| | ||| | ||||||||||||||||||||||||||| | ||| |
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| T |
36361527 |
atccatcagatccatctctcaaattccatgcttgatgattctttggtcgaaaccctttaatacaattacaaacaggtgaagcatttgtgtcacacacacc |
36361428 |
T |
|
| Q |
334 |
ataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
396 |
Q |
| |
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| | |||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
36361427 |
aaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtcca |
36361365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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