View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_30 (Length: 318)
Name: NF0403_low_30
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 19785556 - 19785277
Alignment:
| Q |
14 |
gagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785556 |
gagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgag |
19785457 |
T |
|
| Q |
114 |
cggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccatgcacctttgtgctccctgtggttgtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19785456 |
cggtttgtttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccacgcacctttgtgctccctgtggttgtg |
19785357 |
T |
|
| Q |
214 |
gcgttgttttttatttattcttcttcttagagaaaaagggtttgatggttgcaaacgcttatttttggatccagatttccttt |
296 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
19785356 |
gcgttgttttttatttattcttgttcttagagcaaaagggtttgatggttgcaagcgctta---ttggatccagatttccttt |
19785277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 19796031 - 19796175
Alignment:
| Q |
14 |
gagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgag |
113 |
Q |
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|||||| |||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
19796031 |
gagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctcttccttcaaaacgtgag |
19796130 |
T |
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| Q |
114 |
cggtttgtttctgagccttagccctcgccgccacctcttcagtca |
158 |
Q |
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| T |
19796131 |
caccttctttctcaaccttagctctcgctgccacctcttcagtca |
19796175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 15835338 - 15835478
Alignment:
| Q |
14 |
gagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgag |
113 |
Q |
| |
|
|||||| ||| |||||| |||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
15835338 |
gagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaagcgtgag |
15835437 |
T |
|
| Q |
114 |
cggtttgtttctgagccttagccctcgccgccacctcttca |
154 |
Q |
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| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
15835438 |
cagtttctttctgagccttagctctcgcagccacctcttca |
15835478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 47712937 - 47713019
Alignment:
| Q |
21 |
aatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
103 |
Q |
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|||||||||||||||||||||||||||| | | || || |||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
47712937 |
aatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctctttcttc |
47713019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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