View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_32 (Length: 312)
Name: NF0403_low_32
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 19785548 - 19785277
Alignment:
| Q |
16 |
atcatcaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgt |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785548 |
atcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgt |
19785449 |
T |
|
| Q |
116 |
ttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccatgcacctttgtgctccctgtggttgtggcgttgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19785448 |
ttctgagccttagccctcgccgccacctcttcagtcatcaaagagtctttgtcagtgagtttccacgcacctttgtgctccctgtggttgtggcgttgtt |
19785349 |
T |
|
| Q |
216 |
ttttatttattcttcttcttagagaaaaagggtttgatggttgcaaacgcttatttttggatccagatttccttt |
290 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
19785348 |
ttttatttattcttgttcttagagcaaaagggtttgatggttgcaagcgctta---ttggatccagatttccttt |
19785277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 19796045 - 19796175
Alignment:
| Q |
22 |
aagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctga |
121 |
Q |
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|||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| || ||||| | |
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| T |
19796045 |
aagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctcttccttcaaaacgtgagcaccttctttctca |
19796144 |
T |
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| Q |
122 |
gccttagccctcgccgccacctcttcagtca |
152 |
Q |
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||||||| ||||| |||||||||||||||| |
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| T |
19796145 |
accttagctctcgctgccacctcttcagtca |
19796175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 15835356 - 15835478
Alignment:
| Q |
26 |
aacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaaacatgagcggtttgtttctgagcct |
125 |
Q |
| |
|
|||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| |
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| T |
15835356 |
aacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctcttccttcaaagcgtgagcagtttctttctgagcct |
15835455 |
T |
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| Q |
126 |
tagccctcgccgccacctcttca |
148 |
Q |
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|||| ||||| |||||||||||| |
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| T |
15835456 |
tagctctcgcagccacctcttca |
15835478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 47712938 - 47713019
Alignment:
| Q |
16 |
atcatcaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctcttccttc |
97 |
Q |
| |
|
||||| ||||||||||||||||||||| | | || || |||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
47712938 |
atcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctctttcttc |
47713019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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