View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0403_low_36 (Length: 292)
Name: NF0403_low_36
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42848651 - 42848913
Alignment:
| Q |
1 |
taattttaattttaactactcaagatttatgatactagaagtaaatttcaaagactattattctgtttgacgattttttcgactcatattttaggaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42848651 |
taattttaattttaactactcaagatttatgataatagaagtaaatttcaaagactattattctgtttgatgattttttcgactcatattttaggaggac |
42848750 |
T |
|
| Q |
101 |
tacatgaatttggatacaccagagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacgcatttactcta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42848751 |
tacatgaatttggatacaccggagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacacatttactcta |
42848850 |
T |
|
| Q |
201 |
ttttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtga |
263 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42848851 |
ttttctgtttctgcatatttttgactttcctatttggtgagtttcaggccattgctgttgtga |
42848913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 42853303 - 42853435
Alignment:
| Q |
10 |
ttttaactactcaagatttatgatactagaagtaaatttcaaagactattattctgt------ttgacgattttttcgactcatattttaggaggactac |
103 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||| || |||| ||||| | ||||||||||||||| |
|
|
| T |
42853303 |
ttttaaatactcaagatgtatgattctagaagtaaatttcaaagacta-tattctgttgagtgttgacaatgttttggactcgtcttttaggaggactac |
42853401 |
T |
|
| Q |
104 |
atgaatttggatacac--cagagtcatttaacta |
135 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||| |
|
|
| T |
42853402 |
atgaacttggatacactacagagtcgtttaacta |
42853435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 42857084 - 42857148
Alignment:
| Q |
199 |
tattttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtga |
263 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
42857084 |
tattttctgtttctgcatatttttcactctcccatttggtgaatttcaggccattgctgttgtga |
42857148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 42855475 - 42855555
Alignment:
| Q |
183 |
tgtaacgcatttactct-attttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtga |
263 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
42855475 |
tgtaacgcatt-actcttattttctgtttctgcatatttttcactctcccattaggtgaatttcaggccattgctgttgtga |
42855555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 42856910 - 42856986
Alignment:
| Q |
47 |
ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag |
124 |
Q |
| |
|
|||||||||| ||||| |||| ||| || ||||||||| | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
42856910 |
ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag |
42856986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 42860987 - 42861063
Alignment:
| Q |
47 |
ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag |
124 |
Q |
| |
|
|||||||||| ||||| |||| ||| || ||||||||| | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
42860987 |
ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag |
42861063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1454 times since January 2019
Visitors: 3084