View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0403_low_38 (Length: 282)

Name: NF0403_low_38
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0403_low_38
NF0403_low_38
[»] chr8 (4 HSPs)
chr8 (30-203)||(30634107-30634280)
chr8 (30-78)||(1175172-1175220)
chr8 (235-267)||(30633967-30633999)
chr8 (30-78)||(35673335-35673383)
[»] chr1 (2 HSPs)
chr1 (30-78)||(44782186-44782234)
chr1 (30-78)||(46679761-46679809)
[»] chr5 (8 HSPs)
chr5 (30-78)||(10410857-10410905)
chr5 (30-78)||(8081561-8081609)
chr5 (30-78)||(25725811-25725859)
chr5 (30-81)||(40382757-40382808)
chr5 (30-78)||(25506941-25506989)
chr5 (30-78)||(6742601-6742649)
chr5 (30-74)||(10412430-10412474)
chr5 (34-78)||(25502028-25502072)
[»] chr4 (2 HSPs)
chr4 (30-78)||(4847691-4847739)
chr4 (30-78)||(28395556-28395604)
[»] chr3 (4 HSPs)
chr3 (30-78)||(41874569-41874617)
chr3 (33-78)||(4602355-4602400)
chr3 (33-78)||(27682253-27682298)
chr3 (33-78)||(28133782-28133827)
[»] chr2 (6 HSPs)
chr2 (31-78)||(14007799-14007846)
chr2 (30-83)||(45035214-45035267)
chr2 (30-78)||(1015780-1015828)
chr2 (30-78)||(17308746-17308794)
chr2 (30-78)||(45033419-45033467)
chr2 (30-78)||(3372455-3372503)
[»] chr6 (1 HSPs)
chr6 (30-78)||(15689093-15689141)
[»] chr7 (2 HSPs)
chr7 (30-70)||(29924689-29924729)
chr7 (30-70)||(21464571-21464611)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 30634280 - 30634107
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcatatcagaagatactctaactcatgcaatattgttaaatttatgctacttacaa 129  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30634280 tatctttccattgcatttgacctaaaaccatagaatcctttgattcataacagaagatactctaactcatgcaatattgttaaatttatgctgcttacaa 30634181  T
Q  130 tagccaaaatgtattattacgtaacattcagggaaattaaatagaaaactgacatagctaaagtgtaatatcac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30634180 tagccaaaatgtattattacgtaacattcagggaaattaaatagaaaactgacatagctaaagtgtaatatcac 30634107  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 1175172 - 1175220
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  1175172 tatcttttcattacatttgacctagaaccatagaatcctttaattcata 1175220  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 30633999 - 30633967
Alignment:
Q  235 gtgtttttctttcttttgctttaatccttacct 267  Q
    |||||||||||||||||||||||||||||||||    
T  30633999 gtgtttttctttcttttgctttaatccttacct 30633967  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 35673383 - 35673335
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||| ||||||||| ||||||| || ||||||    
T  35673383 tatctttccattgcatttgacttagaaccatggaatcctctatttcata 35673335  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 44782234 - 44782186
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44782234 tatctttccattgcatttgacctagaaccatggaatcctttaattcata 44782186  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 46679761 - 46679809
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  46679761 tatctttccattgcatttgatctagaaccatggaatcctttgattcata 46679809  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 10410857 - 10410905
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  10410857 tatctttccattgcatttgacctagaaccatggaatcctttgattcata 10410905  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 8081561 - 8081609
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  8081561 tatctttccattgcatttgacctagaaccatggaaccctttgattcata 8081609  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 25725859 - 25725811
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  25725859 tatctttccattgcatttgatctagaaccatggaatcctttgattcata 25725811  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 40382808 - 40382757
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcatatca 81  Q
    |||||||||||||||||||||||||||| ||  |||||||| ||||||||||    
T  40382808 tatctttccattgcatttgacctagaacaatgtaatcctttgattcatatca 40382757  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 25506989 - 25506941
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| ||| |||||| ||||||||| |||||||    
T  25506989 tatctttccattgcatttgatctaaaaccatggaatccttttattcata 25506941  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 6742601 - 6742649
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| ||||||| || ||||| ||| |||||||    
T  6742601 tatctttccattgcatttgatctagaactatggaatcgtttgattcata 6742649  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 10412430 - 10412474
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaatt 74  Q
    |||||||| ||||||||||||||| ||||||  ||||||||||||    
T  10412430 tatctttcgattgcatttgacctaaaaccatgaaatcctttaatt 10412474  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 25502072 - 25502028
Alignment:
Q  34 tttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||| |||||||||| ||||||| | |||||||    
T  25502072 tttccattgcatttgatctagaaccatggaatcctctgattcata 25502028  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 4847739 - 4847691
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||    
T  4847739 tatctttccattacatttgacctagaaccatggaatcctttaattcata 4847691  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 28395604 - 28395556
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  28395604 tatctttccattgcatttgacctaaaaccatggaatcctttgattcata 28395556  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 41874569 - 41874617
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  41874569 tatctttccattgcatttgacctagaaccatggaatcctttgattcata 41874617  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4602355 - 4602400
Alignment:
Q  33 ctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||    
T  4602355 ctttccattgcatttgatctagaaccatggaatcctttgattcata 4602400  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 27682253 - 27682298
Alignment:
Q  33 ctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||    
T  27682253 ctttccattgcatttgatctagaaccatggaatcctttgattcata 27682298  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 28133782 - 28133827
Alignment:
Q  33 ctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||    
T  28133782 ctttccattgcatttgatctagaaccatggaatcctttgattcata 28133827  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 14007799 - 14007846
Alignment:
Q  31 atctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  14007799 atctttccattgcatttgacctagaaccatggaatcctttgattcata 14007846  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 45035214 - 45035267
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcatatcaga 83  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||    
T  45035214 tatctttccattgcatttgatctagaaccatggaatcctttgattcataacaga 45035267  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 1015780 - 1015828
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  1015780 tatctttccattgcatttgatctagaaccatggaatcctttgattcata 1015828  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 17308746 - 17308794
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  17308746 tatctttccattgcatttgatctagaacaatggaatcctttgattcata 17308794  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 45033419 - 45033467
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    |||||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  45033419 tatctttccattgcatttgatctagaaccatggaatcttttgattcata 45033467  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 3372503 - 3372455
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||| |||||||||||||| || ||||| ||| |||||||    
T  3372503 tatctttccattgtatttgacctagaactatggaatcttttgattcata 3372455  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 15689093 - 15689141
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatcctttaattcata 78  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  15689093 tatctttccattgcatttgacctagaatcatggaatcctttgattcata 15689141  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 29924689 - 29924729
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatccttt 70  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  29924689 tatctttccattgcatttgacctagaactatggaatccttt 29924729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21464571 - 21464611
Alignment:
Q  30 tatctttccattgcatttgacctagaaccatagaatccttt 70  Q
    |||||||||||||||||||| |||||||||| |||| ||||    
T  21464571 tatctttccattgcatttgatctagaaccatggaattcttt 21464611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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