View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_4 (Length: 570)
Name: NF0403_low_4
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_4 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 87 - 570
Target Start/End: Complemental strand, 33491690 - 33491203
Alignment:
| Q |
87 |
catcatcaatgttttcttcatatggagatggtgatatctcctccagtaataaaaccatgtcttcccaaaaaactgaaggaaattctagaattggatcctt |
186 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33491690 |
catcaacaatgttttcttcagatggagatggtgatatctcctccagtaataaaaccatgtcttcccaaaaaactgaaggaaattcaagaattggatcctt |
33491591 |
T |
|
| Q |
187 |
cttgtaaaagataaagaagatcatcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactac |
286 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
33491590 |
cttgtaaaagataaagaagatcctcatcaagtgttggaagaaaaccttaggtttgtcttgtaagtaaaccaaaagtaaaaaaaaaataaagctaaactac |
33491491 |
T |
|
| Q |
287 |
aattatggttaatagtgccaaaattgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaatgta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
33491490 |
aattatggttaatagtgccaaaattgtagttaattacgtgcaatggatgataaacagagttgcgacaactttttatattcataaccattcacttaatgta |
33491391 |
T |
|
| Q |
387 |
atattaacaacaccacatgttttaattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaat |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
33491390 |
atattaacaacaccacatgttttaattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaactcttaaat |
33491291 |
T |
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| Q |
487 |
tagt---attagatcaaacacaagaagggttagggagctagcgggtagcgttttgatgatattggggttgg-caatgtcacatgacat |
570 |
Q |
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| T |
33491290 |
tagtattattagatcaaacacaagaaggattagggagctagcgggtagcgctttgatgacattgtggttggccaatgtcacatgacat |
33491203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 87 - 524
Target Start/End: Complemental strand, 33413265 - 33412830
Alignment:
| Q |
87 |
catcatcaatgttttcttcatatggagatggtgatatctcctccag--taataaaaccatgtcttcccaaaaaactgaaggaaattctagaattggatcc |
184 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
33413265 |
catcaacaatgttttcttcatatggagatggtgatatctcctctagcataataaaagcatgtcttgccaaaaa-ctgaaggaaattcaagaattggatcc |
33413167 |
T |
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| Q |
185 |
ttcttgtaaaagata-aagaagatcatcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaac |
283 |
Q |
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| T |
33413166 |
ttcttgtaaaagacagaaggagatcctcatcaagtgttggaaaaataccttaggtttgtcttgtgactaaaccaaaagtaaaaaaagg--aaagctaaac |
33413069 |
T |
|
| Q |
284 |
tacaattatggttaatagtgc-caaaattgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaa |
382 |
Q |
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| T |
33413068 |
tacaattatggttaatagtgctcaaaatcgtagttaattgcatgcaatggatgataaac-gagttgcggcaactttttagattcattaaccatcactgaa |
33412970 |
T |
|
| Q |
383 |
tgtaatattaacaacaccacatgttttaattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaag-caaaaaccct |
481 |
Q |
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| T |
33412969 |
cgtaat--taaccataccacatattttaattgtgttaaccattcaattttttatcgaattttgtgggtcagccattaaaaggcttcaagccaagaaccct |
33412872 |
T |
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| Q |
482 |
caaattagtattagatcaaacacaagaagggttagggagctag |
524 |
Q |
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| T |
33412871 |
caaattagtattagatcaaa-tcaagaagggttagagagctag |
33412830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 524
Target Start/End: Complemental strand, 33420405 - 33419967
Alignment:
| Q |
87 |
catcatcaatgttttcttcatatggagatggtgatatctcctccagta-----ataaaaccatgtct---tcccaaaaaactgaaggaaattctagaatt |
178 |
Q |
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||||| |||||||||||| | |||||||||||||||||||||| ||| |||||| |||| | |||| |||||| ||||||||||| |||||| |
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| T |
33420405 |
catcaacaatgttttctttagatggagatggtgatatctcctcttgtagcaaaataaaagcatgcatgtctccccaaaaaccgaaggaaattcaagaatt |
33420306 |
T |
|
| Q |
179 |
ggatccttcttgtaaaagata-aagaagatcatcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaag |
277 |
Q |
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|||||||| |||||||| | ||| ||||| ||||||||||||||||||| |||| |||||||||| || ||| |||||||||| ||| | |
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| T |
33420305 |
tgatccttcaagtaaaagacataaggagatcctcatcaagtgttggaagaataccttaggtttgtctcatgagtgaaccaaaagtaaaaaaaaattaa-g |
33420207 |
T |
|
| Q |
278 |
ctaaactacaattatggttaatagtgc-caaaattgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattca-taatcatt |
375 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||| |||| |||||||| ||| ||| |
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| T |
33420206 |
ctaaattacaattatggttaatagtgctcaaaattgtagttaattacgtgcaattgatgataaa-tgagttgcgacacctttatatattcattaaccatc |
33420108 |
T |
|
| Q |
376 |
cacttaatgtaatattaacaacaccacatgttttaattgtgttaaccattcaattttttgtcgaa-ttttgtgtgtcagccattaaaaggcttcaagcaa |
474 |
Q |
| |
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|| | || ||| |||||| | | ||||| |||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||| || || |
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| T |
33420107 |
cattaaacgta--attaaccataacacataatttaattgtgttaaccattcaattatttgtcgaatttttttgtgtcaaccattaaaaggc----aggaa |
33420014 |
T |
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| Q |
475 |
aaaccctcaaattagtattagatcaaacacaagaagggttagggagctag |
524 |
Q |
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| T |
33420013 |
ta---ctcaaattagcattagatcaaacacaagaatgattagagagctag |
33419967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 28812287 - 28812323
Alignment:
| Q |
93 |
caatgttttcttcatatggagatggtgatatctcctc |
129 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
28812287 |
caatgttttcttcagatggagatggtgatatctcctc |
28812323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 509
Target Start/End: Original strand, 28812598 - 28812629
Alignment:
| Q |
478 |
ccctcaaattagtattagatcaaacacaagaa |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
28812598 |
ccctcaaattagtattagatcaaacacaagaa |
28812629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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