View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0403_low_40 (Length: 253)
Name: NF0403_low_40
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 43473844 - 43473604
Alignment:
| Q |
10 |
gcacagatgagaatgatattgttagggttcgggagtgcacttatacgattagccttttgattttcaaaaaggaattctctgttacaaaataatctta--- |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43473844 |
gcacagatgagaataatattgttagggttcgggagtgcacttatacgattagccttttgattttcaaaaaggaattatctgttacaaaataatcttaatt |
43473745 |
T |
|
| Q |
107 |
-attagttattttctcgctcttctaaatgggaatttttgtttacaaaaaactaggatgagactttatttttgttggtcattattaagttagactagaagt |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43473744 |
aattagttattttctcgctcttctaaataggaatttttgttaacaaaaaactaggatgaaactttatttttgttggtc---attaagttagactagaagt |
43473648 |
T |
|
| Q |
206 |
tacatcaatacgacaccctttaagtgatacacccacacaccact |
249 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43473647 |
tacatcgacacgacaccctttaagtgatacacccacacaccact |
43473604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1660 times since January 2019
Visitors: 3091