View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_44 (Length: 249)
Name: NF0403_low_44
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33491202 - 33490982
Alignment:
| Q |
1 |
tggcactccaatatcatcaaagtactacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggt |
100 |
Q |
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| T |
33491202 |
tggcaccccaatatcatcaaagtgctacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggt |
33491103 |
T |
|
| Q |
101 |
tggttatatatagaaatgtagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaattcctcta |
200 |
Q |
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| T |
33491102 |
tgattatatatagaaatgtagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaattcctgta |
33491003 |
T |
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| Q |
201 |
aagaaattattacatgctgat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33491002 |
aagaaattattacatgctgat |
33490982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 33419974 - 33419821
Alignment:
| Q |
31 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
130 |
Q |
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| T |
33419974 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
33419875 |
T |
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| Q |
131 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
184 |
Q |
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| T |
33419874 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
33419821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 28812655 - 28812806
Alignment:
| Q |
70 |
tcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagac |
169 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
28812655 |
tcaagaactaacttgatgagcataagaaggttggtcatatatagaaatgtagcttccttgacacttctgtaaatcattaaggtctgcaagattatgagac |
28812754 |
T |
|
| Q |
170 |
aagactcccacaacagcaccaaattcctctaaagaaattattacatgctgat |
221 |
Q |
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|||||||||||||||||||||| | ||| ||||||| || |||||| |||| |
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| T |
28812755 |
aagactcccacaacagcaccaattccctgcaaagaaactactacatgatgat |
28812806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 33412837 - 33412742
Alignment:
| Q |
31 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
130 |
Q |
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|||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33412837 |
agagctagtaaagattaaaa-tatcatgccaacaattgatcaagaactaacttgatgagcataagaa---tggttatatatagaaatgtagcttccttga |
33412742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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