View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_5 (Length: 515)
Name: NF0403_low_5
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 73 - 486
Target Start/End: Complemental strand, 51756015 - 51755592
Alignment:
| Q |
73 |
aacgtctaaacaatttccttgcattctctgtcaatgacatcttcatc------gtaataataatacacggtaaacttcatctttccctttgtaactccgt |
166 |
Q |
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||||||| |||| | ||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51756015 |
aacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttgtaactccgt |
51755916 |
T |
|
| Q |
167 |
catcgtcttcaacaacgctgttactaggaacacgcgctggacaagcatcatcatgacgaggttccaacacttccagacctaggtgaggtttatcggagga |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755915 |
catcgtcttcaacaacgctgttactaggaacacgcgctggacaagcataatcatgacgaggttccaacacttccagacctaggtgaggtttatcggagga |
51755816 |
T |
|
| Q |
267 |
agtgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagattacggcgagccatgtccataaatggttgaagaaatcgaagctc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755815 |
agtgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagatgacggcgagccatgtccataaatggttgaagaaatcgaagctc |
51755716 |
T |
|
| Q |
367 |
aagtagttgaaagctagagtgtcaagtggagaattttctgacatgttcatctctgtgagcgtgttc-----ttcttttaacttttgatggtaagagtgga |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
51755715 |
aagtagttgaaagctagagtgtcaagtggagaattttctaacatgttcatctctgtgagcgtgttcttctcttcttttcacttttgatggtaagagtgga |
51755616 |
T |
|
| Q |
462 |
ggggggtgtgagtgagagtggtgaa |
486 |
Q |
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|||||||||||||||||||||||| |
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| T |
51755615 |
-gggggtgtgagtgagagtggtgaa |
51755592 |
T |
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