View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0403_low_8 (Length: 446)
Name: NF0403_low_8
Description: NF0403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0403_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 37155227 - 37154817
Alignment:
| Q |
30 |
actaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatatagagaatg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155227 |
actaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatatagagaatg |
37155128 |
T |
|
| Q |
130 |
cgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatccttgtcat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155127 |
cgaccaataacatgtagtttcttcttttcttgcacagaaacagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatccttgtcat |
37155028 |
T |
|
| Q |
230 |
caattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaagtcaatacc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155027 |
caattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaagtcaatacc |
37154928 |
T |
|
| Q |
330 |
atctgtgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatattttgcgatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154927 |
atctgtgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatattttgcgatt |
37154828 |
T |
|
| Q |
430 |
ctctctgctcc |
440 |
Q |
| |
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||||||||||| |
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| T |
37154827 |
ctctctgctcc |
37154817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 25223003 - 25223180
Alignment:
| Q |
30 |
actaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatatagagaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || || ||||||||| |
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| T |
25223003 |
actaacagaaaatctcaaactatccatcatgcttagtaaaaggttttgaaacaaggcattgcaggaaggcattga----------------tagagaatg |
25223086 |
T |
|
| Q |
130 |
cgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatcct |
223 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25223087 |
cgaccaatatcatgtagtttcttcttttcttcgacataaatagtgttatacatctcataagacgcaatgctgttgataataaagttgacatcct |
25223180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 25287159 - 25287336
Alignment:
| Q |
30 |
actaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatatagagaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || || ||||||||| |
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|
| T |
25287159 |
actaacagaaaatctcaaactatccatcatgcttagtaaaaggttttgaaacaaggcattgcaggaaggcattga----------------tagagaatg |
25287242 |
T |
|
| Q |
130 |
cgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatcct |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25287243 |
cgaccaatatcatgtagtttcttcttttcttcgacataaatagtgttatacatctcataagacgcaatgctgttgataataaagttgacatcct |
25287336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 22830841 - 22830907
Alignment:
| Q |
370 |
aaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatattttgcgattctctctg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||| |
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| T |
22830841 |
aaataggtatttatggtgtcttttaatgaagacaaaatagcgtcggtatattttgcgattttctctg |
22830907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 35 - 440
Target Start/End: Complemental strand, 43387143 - 43386738
Alignment:
| Q |
35 |
cagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatatagagaatgcgacc |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| |
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|
| T |
43387143 |
cagaaaatcccaatttatccatcattcttaagaaaagactttgaaacacagcattgcaggaaggaatggaagtcttggcagaaatatataaaatgcgacc |
43387044 |
T |
|
| Q |
135 |
aataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatccttgtcatcaatt |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
43387043 |
aatagcatgtagtttcttcttttcttgcacagaaatagtgtcgtacatctcataagatgcaatgctgttggtaatgaagttgacatcctcatcatcaatt |
43386944 |
T |
|
| Q |
235 |
atcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaagtcaataccatctg |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| | |||||||||| |
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|
| T |
43386943 |
atcaagctaactaactgactactattttgcacaataagctgctgaaggagggagagagcttcaactacaacttcgctctttggaaaattgataccatctg |
43386844 |
T |
|
| Q |
335 |
tgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatattttgcgattctctc |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43386843 |
tgggtgctagagtaaaagagaaatctggctcccccaaataagtatataaagtgtcttttaatgaagaccaaatagccccagtatattttgcgattctctc |
43386744 |
T |
|
| Q |
435 |
tgctcc |
440 |
Q |
| |
|
|||||| |
|
|
| T |
43386743 |
tgctcc |
43386738 |
T |
|
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