View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0404_low_3 (Length: 297)
Name: NF0404_low_3
Description: NF0404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0404_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 24927391 - 24927476
Alignment:
| Q |
22 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagcggtgtatcaggtggtgtaagaagcctgataacaaaaaactcttgt |
107 |
Q |
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| T |
24927391 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagtggtgtatcaggtggtgtaagaagcctgataacgaaaaactcttgt |
24927476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 24928792 - 24928852
Alignment:
| Q |
108 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaatgtca |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24928792 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtca |
24928852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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