View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0404_low_4 (Length: 277)

Name: NF0404_low_4
Description: NF0404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0404_low_4
NF0404_low_4
[»] scaffold0083 (1 HSPs)
scaffold0083 (50-266)||(54372-54583)
[»] chr3 (23 HSPs)
chr3 (50-266)||(9980554-9980765)
chr3 (50-266)||(10035091-10035302)
chr3 (50-266)||(10263789-10264000)
chr3 (50-266)||(10130010-10130214)
chr3 (50-218)||(9852965-9853128)
chr3 (50-218)||(10520573-10520736)
chr3 (50-210)||(10583670-10583829)
chr3 (50-218)||(9841946-9842109)
chr3 (50-175)||(10430898-10431022)
chr3 (50-171)||(10666623-10666742)
chr3 (198-266)||(10430718-10430786)
chr3 (50-160)||(11772322-11772429)
chr3 (50-175)||(10360658-10360782)
chr3 (50-175)||(10372768-10372892)
chr3 (50-160)||(11778856-11778963)
chr3 (50-113)||(10092083-10092146)
chr3 (50-113)||(10198965-10199028)
chr3 (55-171)||(10503744-10503857)
chr3 (50-173)||(10531869-10531989)
chr3 (60-139)||(10086273-10086352)
chr3 (60-139)||(10193193-10193272)
chr3 (50-114)||(10680667-10680731)
chr3 (77-124)||(8585531-8585578)
[»] chr2 (1 HSPs)
chr2 (50-123)||(26909976-26910049)
[»] chr4 (1 HSPs)
chr4 (55-139)||(17849815-17849899)
[»] chr8 (1 HSPs)
chr8 (60-139)||(44954552-44954631)


Alignment Details
Target: scaffold0083 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 266
Target Start/End: Complemental strand, 54583 - 54372
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||| || || |||    
T  54583 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgat-ag-aca 54486  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 249  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54485 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 54389  T
Q  250 catgggtcctatgctac 266  Q
    |||||||||| ||||||    
T  54388 catgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 9980554 - 9980765
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||| || || |||    
T  9980554 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgat-ag-aca 9980651  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 249  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980652 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 9980748  T
Q  250 catgggtcctatgctac 266  Q
    |||||||||| ||||||    
T  9980749 catgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 10035091 - 10035302
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||||||||||||| || || |||    
T  10035091 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatgat-ag-aca 10035188  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 249  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035189 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 10035285  T
Q  250 catgggtcctatgctac 266  Q
    |||||||||| ||||||    
T  10035286 catgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 10263789 - 10264000
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||   |||||||| ||||||||||||| || ||| ||    
T  10263789 cattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatgat-aga-ca 10263886  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 249  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10263887 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 10263983  T
Q  250 catgggtcctatgctac 266  Q
    |||||||||| ||||||    
T  10263984 catgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 10130010 - 10130214
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| | |||| ||      || |||||||| || ||| ||    
T  10130010 cattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatatcaa------aggcacaatatgat-aga-ca 10130101  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatct 249  Q
    |||||||||||  ||||||||||| |||  |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10130102 agttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaatattttcatatcatct 10130197  T
Q  250 catgggtcctatgctac 266  Q
    |||||||||| ||||||    
T  10130198 catgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 9852965 - 9853128
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| | || ||||||| || || |||    
T  9852965 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagaaataaatgaccaggttacaatatgat-ag-aca 9853062  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 218  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9853063 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 10520573 - 10520736
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||| || |||||||||||| || || |||    
T  10520573 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtcacaatatgat-ag-aca 10520670  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 218  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  10520671 agttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 10583670 - 10583829
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||| || |||||||||||| || || |||    
T  10583670 cattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatgat-ag-aca 10583767  T
Q  150 agttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 210  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583768 agttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 9841946 - 9842109
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||  || |||||| ||||| || || |||    
T  9841946 cattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatgat-ag-aca 9842043  T
Q  150 agttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842044 agttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 10431022 - 10430898
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || || |||    
T  10431022 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatgat-ag-aca 10430925  T
Q  150 agttgtgttccag-tttcaggtatgtt 175  Q
    ||||||||||||| |||||||||||||    
T  10430924 agttgtgttccagttttcaggtatgtt 10430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 10666623 - 10666742
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||| || || ||     
T  10666623 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgat-ag-acg 10666720  T
Q  150 agttgtgttccagtttcaggta 171  Q
    ||||||||||| ||||||||||    
T  10666721 agttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  198 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 11772322 - 11772429
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||  ||||||||||   |||||||||    
T  11772322 cattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaat---atgagaaca 11772418  T
Q  150 agttgtgttcc 160  Q
    || ||||||||    
T  11772419 agctgtgttcc 11772429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 10360782 - 10360658
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| | ||||| ||| |||||||||||| || || |||    
T  10360782 cattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatgat-ag-aca 10360685  T
Q  150 agttgtgttccag-tttcaggtatgtt 175  Q
    ||||||||||| | |||||||||||||    
T  10360684 agttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 10372892 - 10372768
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||    
T  10372892 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-aca 10372795  T
Q  150 agttgtgttccag-tttcaggtatgtt 175  Q
    ||||||||||| | |||||||||||||    
T  10372794 agttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 11778963 - 11778856
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||||||  ||||||||||   |||||||||    
T  11778963 cattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaat---atgagaaca 11778867  T
Q  150 agttgtgttcc 160  Q
    || ||||||||    
T  11778866 agctgtgttcc 11778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 10092083 - 10092146
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 113  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10092083 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 10198965 - 10199028
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 113  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10198965 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 10503744 - 10503857
Alignment:
Q  55 ttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttg 154  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||| |||   ||||||||||   ||||| ||| | ||    
T  10503744 ttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctg 10503840  T
Q  155 tgttccagtttcaggta 171  Q
    |||||| ||||||||||    
T  10503841 tgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 10531869 - 10531989
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaaca 149  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||   |||||  |  |||| |||||   ||||  |||    
T  10531869 cattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaat---atgaagaca 10531965  T
Q  150 agttgtgttccagtttcaggtatg 173  Q
    ||||||||||| ||||||||||||    
T  10531966 agttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 10086273 - 10086352
Alignment:
Q  60 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 139  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10086273 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10086352  T

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Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 10193193 - 10193272
Alignment:
Q  60 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 139  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10193193 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10193272  T

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Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 10680667 - 10680731
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 114  Q
    ||||||||| |||||||||||||||||| |||||  ||||||||||| |||||||||||||||||    
T  10680667 cattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata 10680731  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
Q  77 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg 124  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaatg 8585531  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 26909976 - 26910049
Alignment:
Q  50 cattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 123  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26909976 cattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 17849899 - 17849815
Alignment:
Q  55 ttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 139  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||  | ||| ||||||||||||    
T  17849899 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatat 17849815  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 44954631 - 44954552
Alignment:
Q  60 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 139  Q
    ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | ||||||||||||    
T  44954631 agaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatat 44954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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