View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0404_low_6 (Length: 259)
Name: NF0404_low_6
Description: NF0404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0404_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 24928919 - 24928792
Alignment:
| Q |
81 |
aggaaagagatgaagagcttgctttgttccttgagatgaggaggagcagagaaagagaatgaaaagaatgacattctacttcttcaaaactctgaggaac |
180 |
Q |
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| T |
24928919 |
aggaaagagatgaagagcttgctttgttccttgagatgaggaggag-agagaaagagaatgaaaagaatgaccttctacttcttcaaaactctgaggaac |
24928821 |
T |
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| Q |
181 |
ttgatttgtccaacttgggtatgtttttt |
209 |
Q |
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| T |
24928820 |
ttgatttgtccaacttgggtatgtttttt |
24928792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 24927476 - 24927427
Alignment:
| Q |
210 |
acaagagttttttgttatcaggcttcttacaccacctgatacaccgcttt |
259 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
24927476 |
acaagagtttttcgttatcaggcttcttacaccacctgatacaccacttt |
24927427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 31869828 - 31869878
Alignment:
| Q |
96 |
agcttgctttgttccttgagatgaggaggagcagagaaagagaatgaaaaga |
147 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31869828 |
agcttgctttgttccttgagatgaggaggag-agagaaagagaatgaaaaga |
31869878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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