View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0404_low_9 (Length: 205)
Name: NF0404_low_9
Description: NF0404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0404_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 24928883 - 24928792
Alignment:
| Q |
7 |
tgaggaggagcagagaaagagaatgaaaagaatgacattctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
99 |
Q |
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| T |
24928883 |
tgaggaggag-agagaaagagaatgaaaagaatgaccttctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
24928792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 24927476 - 24927391
Alignment:
| Q |
100 |
acaagagttttttgttatcaggcttcttacaccacctgatacaccgctttttcctactttagacaaggagtcacaaatgccattga |
185 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24927476 |
acaagagtttttcgttatcaggcttcttacaccacctgatacaccactttttcctactttagacaaggagtcacaaatgccattga |
24927391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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