View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0405_high_4 (Length: 265)

Name: NF0405_high_4
Description: NF0405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0405_high_4
NF0405_high_4
[»] chr8 (15 HSPs)
chr8 (66-236)||(25469620-25469790)
chr8 (139-236)||(25688062-25688159)
chr8 (139-236)||(25330916-25331013)
chr8 (107-236)||(25419766-25419893)
chr8 (71-236)||(25500808-25500972)
chr8 (71-236)||(24890640-24890804)
chr8 (107-236)||(25428106-25428233)
chr8 (107-222)||(25485695-25485808)
chr8 (71-236)||(25635083-25635247)
chr8 (107-236)||(25825532-25825659)
chr8 (167-236)||(24917354-24917423)
chr8 (166-235)||(22880931-22881000)
chr8 (14-70)||(25485828-25485884)
chr8 (139-236)||(25710701-25710798)
chr8 (14-70)||(25738113-25738169)
[»] chr1 (1 HSPs)
chr1 (147-236)||(23394577-23394666)
[»] scaffold0070 (1 HSPs)
scaffold0070 (107-236)||(41506-41633)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 25469620 - 25469790
Alignment:
Q  66 atagaaggaggaataaatcttatattaaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggat 165  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25469620 atagaaggaggaataaatcctatattaaattctaacatcagaaataatgtgactacaagaaatatatagcaaatatgacacataatatcagtgctaggag 25469719  T
Q  166 tacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25469720 tacctgaaaagtagttggatgataaatcgatatattcaagtgaggacaaatttgaaattgattgaggtatg 25469790  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25688062 - 25688159
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  25688062 tatgacacataatatcagagttagaagtacctgaaaagtagttgaaagataaaccgatacgttcaagtgaggacaaatttgaaattgattgaggtatg 25688159  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25330916 - 25331013
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| | ||||| ||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||||| ||||||||||    
T  25330916 tatgacacataatatcagagctaggagtacctgaaaagtagttggaagataaatcaatatattcaagtgaagacaaatttgaaattgtttgaggtatg 25331013  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25419766 - 25419893
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttga-atgataaaccgatatattcaag 205  Q
    ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| |||||||||||||||||| | ||| |||||| | |||||||||    
T  25419766 aaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacctgaaaagtagttaagatg-taaaccaagatattcaag 25419862  T
Q  206 tgaggacaaatttgaaattgattgaggtatg 236  Q
    ||| ||||  |||||||||| ||||||||||    
T  25419863 tgaagacatgtttgaaattgtttgaggtatg 25419893  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 25500808 - 25500972
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| |||||||| |||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  |||||||||||| |||||||| | ||| ||||||    
T  25500808 aggagtaataaatcctatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacagaatatcagggctagcattacc 25500905  T
Q  170 tgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||| | |  |||| | | |||||||||||| ||||  |||||||||| ||||||||||    
T  25500906 tgaaaagtagttaagttgtaaagcaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 25500972  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 24890804 - 24890640
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| ||||||||  ||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| ||||||    
T  24890804 aggagtaataaatccaatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacc 24890707  T
Q  170 tgaaaagtagttga-atgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||| | ||| |||| | | |||||||||||| ||||  |||||||||| ||||||||||    
T  24890706 tgaaaagtagttaagatg-taaaacaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 24890640  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25428106 - 25428233
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatga--taaaccgatatattcaa 204  Q
    ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| ||||||||||||||||||  ||||  |||| | | ||||||||    
T  25428106 aaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacctgaaaagtagtt--atgatgtaaatcaagatattcaa 25428201  T
Q  205 gtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||| ||||  |||||||||| ||||||||||    
T  25428202 gtgaagacatgtttgaaattgtttgaggtatg 25428233  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 25485695 - 25485808
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagt 206  Q
    ||||||||||| ||||||||||||| |  |||||||||||||||||| || ||| | ||||||||||||||||||| | |||||| | | ||||||||||    
T  25485695 aaatagtgtgaatacaagaaatataga--aaatatgacacataatattagagttggtattacctgaaaagtagttggaagataaatctagatattcaagt 25485792  T
Q  207 gaggacaaatttgaaa 222  Q
    || ||||  |||||||    
T  25485793 gaagacatgtttgaaa 25485808  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 25635083 - 25635247
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| |||||||| |||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  |||||||||||| || ||||  | |||| |||||    
T  25635083 aggagtaataaatcctatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacagaaaatcaaagctaggtttacc 25635180  T
Q  170 tgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||||||||  |   |||||| | |||||||||||| ||||  |||||||||| ||||||||||    
T  25635181 tgaaaagtagttatactgtaaaccaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 25635247  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25825532 - 25825659
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttga-atgataaaccgatatattcaag 205  Q
    ||||||||||| ||||||||||||| |  |||||||||||| |||||||| | ||| |||||||||||||||||| | |||  ||| | | |||||||||    
T  25825532 aaatagtgtgaatacaagaaatataga--aaatatgacacagaatatcagagctagcattacctgaaaagtagttaagatg-gaaaacaagatattcaag 25825628  T
Q  206 tgaggacaaatttgaaattgattgaggtatg 236  Q
    ||| ||||  |||||||||| ||||||||||    
T  25825629 tgaagacatgtttgaaattgtttgaggtatg 25825659  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 24917423 - 24917354
Alignment:
Q  167 acctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| | |||||| | |||||||||||| ||||  |||||||||| ||||||||||    
T  24917423 acctgaaaagtagttgaaaggtaaaccaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 24917354  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 22881000 - 22880931
Alignment:
Q  166 tacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtat 235  Q
    ||||||||||||||||  | || || |||| |||||||||||| |||| ||||||||||| |||||||||    
T  22881000 tacctgaaaagtagttagaagagaagccgacatattcaagtgaagacatatttgaaattgtttgaggtat 22880931  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25485828 - 25485884
Alignment:
Q  14 agacaacttgttcatactaatgtccaatactttcaactgatgaaggttaccgataga 70  Q
    |||||| |||||| ||||||| |||||||  ||||||||||||||| ||||||||||    
T  25485828 agacaaattgttcttactaatttccaataacttcaactgatgaaggctaccgataga 25485884  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25710701 - 25710798
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||| |||||||||| || | ||||| |||||||||||||||| |  | ||||  ||||| ||||||||| ||||  ||| |||||| ||||||||||    
T  25710701 tatgtcacataatattagagctaggagtacctgaaaagtagttaacagctaaattgatatgttcaagtgaagacatgtttaaaattgtttgaggtatg 25710798  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25738113 - 25738169
Alignment:
Q  14 agacaacttgttcatactaatgtccaatactttcaactgatgaaggttaccgataga 70  Q
    ||||| |||||||  || ||| |||||| |||||||||||||||||||||| |||||    
T  25738113 agacatcttgttctgaccaatttccaattctttcaactgatgaaggttaccaataga 25738169  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 23394666 - 23394577
Alignment:
Q  147 ataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||| || ||||||| ||||||||||||||||  | |||||||| ||||||| |||||| ||||  |||||||||| ||||||||||    
T  23394666 ataatattagagttaggagtacctgaaaagtagttagaagataaaccaatatatttaagtgaagacatgtttgaaattgtttgaggtatg 23394577  T

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Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 41633 - 41506
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagt 206  Q
    ||||||||||| || |||||||||  |  ||||||| ||||||||||||| | | | ||||||||||||||||||| | |||||| ||| |||||||||     
T  41633 aaatagtgtgaatataagaaatattga--aaatatgccacataatatcagagcttgcattacctgaaaagtagttggacgataaatcgagatattcaaga 41536  T
Q  207 gaggacaaatttgaaattgattgaggtatg 236  Q
    || ||||  ||||||| |  ||||||||||    
T  41535 gaagacatgtttgaaactccttgaggtatg 41506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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