View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0405_low_1 (Length: 348)

Name: NF0405_low_1
Description: NF0405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0405_low_1
NF0405_low_1
[»] chr1 (6 HSPs)
chr1 (108-265)||(48584483-48584640)
chr1 (152-265)||(48619037-48619150)
chr1 (151-255)||(11546415-11546519)
chr1 (150-265)||(48628108-48628223)
chr1 (149-265)||(48666350-48666466)
chr1 (161-265)||(48655786-48655890)
[»] chr3 (1 HSPs)
chr3 (152-262)||(19666396-19666506)
[»] chr8 (1 HSPs)
chr8 (153-265)||(27227341-27227453)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 108 - 265
Target Start/End: Original strand, 48584483 - 48584640
Alignment:
Q  108 attacatgttctagatgttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584483 attacatgttctagatgttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggc 48584582  T
Q  208 caaagcttcctccgccttcttcttccacttttttgcattttgcttcaacttctctgct 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48584583 caaagcttcctccgccttcttcttccacttgtttgcattttgcttcaacttctctgct 48584640  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 48619150 - 48619037
Alignment:
Q  152 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 251  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||  ||||||||| ||    
T  48619150 ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct 48619051  T
Q  252 tcaacttctctgct 265  Q
    |||||| |||||||    
T  48619050 tcaactcctctgct 48619037  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 11546415 - 11546519
Alignment:
Q  151 tttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgc 250  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  |||||||| ||||| |||||||||||| ||||||||| |    
T  11546415 tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc 11546514  T
Q  251 ttcaa 255  Q
    |||||    
T  11546515 ttcaa 11546519  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 48628108 - 48628223
Alignment:
Q  150 gtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttg 249  Q
    |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||||  |||||||||     
T  48628108 gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt 48628207  T
Q  250 cttcaacttctctgct 265  Q
    |||||||| |||||||    
T  48628208 cttcaactcctctgct 48628223  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 48666350 - 48666466
Alignment:
Q  149 tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatttt 248  Q
    |||||||||||||||||||||||  |||||||||  || || ||||| |||||||| ||||  ||||||||||||  ||| ||| ||||  |||||||||    
T  48666350 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 48666449  T
Q  249 gcttcaacttctctgct 265  Q
     ||||||| ||||||||    
T  48666450 tcttcaacgtctctgct 48666466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 48655786 - 48655890
Alignment:
Q  161 tcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaacttct 260  Q
    ||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||  ||||||||| |||||||| ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  261 ctgct 265  Q
    |||||    
T  48655886 ctgct 48655890  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 19666506 - 19666396
Alignment:
Q  152 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 251  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    ||||  ||||||||||||   |||||||||||  ||||||||||||    
T  19666506 ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct 19666407  T
Q  252 tcaacttctct 262  Q
    |||||| ||||    
T  19666406 tcaactcctct 19666396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 27227341 - 27227453
Alignment:
Q  153 tcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgctt 252  Q
    |||||||||||||||||||  |||||| || |||||||||||| ||||| || || |  ||  |||||||   ||||||||||||  |||  ||||||||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  253 caacttctctgct 265  Q
    |||| ||||||||    
T  27227441 caacatctctgct 27227453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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