View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0405_low_5 (Length: 265)

Name: NF0405_low_5
Description: NF0405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0405_low_5
NF0405_low_5
[»] chr8 (15 HSPs)
chr8 (66-236)||(25469620-25469790)
chr8 (139-236)||(25688062-25688159)
chr8 (139-236)||(25330916-25331013)
chr8 (107-236)||(25419766-25419893)
chr8 (71-236)||(25500808-25500972)
chr8 (71-236)||(24890640-24890804)
chr8 (107-236)||(25428106-25428233)
chr8 (107-222)||(25485695-25485808)
chr8 (71-236)||(25635083-25635247)
chr8 (107-236)||(25825532-25825659)
chr8 (167-236)||(24917354-24917423)
chr8 (166-235)||(22880931-22881000)
chr8 (14-70)||(25485828-25485884)
chr8 (139-236)||(25710701-25710798)
chr8 (14-70)||(25738113-25738169)
[»] chr1 (1 HSPs)
chr1 (147-236)||(23394577-23394666)
[»] scaffold0070 (1 HSPs)
scaffold0070 (107-236)||(41506-41633)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 25469620 - 25469790
Alignment:
Q  66 atagaaggaggaataaatcttatattaaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggat 165  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25469620 atagaaggaggaataaatcctatattaaattctaacatcagaaataatgtgactacaagaaatatatagcaaatatgacacataatatcagtgctaggag 25469719  T
Q  166 tacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25469720 tacctgaaaagtagttggatgataaatcgatatattcaagtgaggacaaatttgaaattgattgaggtatg 25469790  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25688062 - 25688159
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  25688062 tatgacacataatatcagagttagaagtacctgaaaagtagttgaaagataaaccgatacgttcaagtgaggacaaatttgaaattgattgaggtatg 25688159  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25330916 - 25331013
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| | ||||| ||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||||| ||||||||||    
T  25330916 tatgacacataatatcagagctaggagtacctgaaaagtagttggaagataaatcaatatattcaagtgaagacaaatttgaaattgtttgaggtatg 25331013  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25419766 - 25419893
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttga-atgataaaccgatatattcaag 205  Q
    ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| |||||||||||||||||| | ||| |||||| | |||||||||    
T  25419766 aaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacctgaaaagtagttaagatg-taaaccaagatattcaag 25419862  T
Q  206 tgaggacaaatttgaaattgattgaggtatg 236  Q
    ||| ||||  |||||||||| ||||||||||    
T  25419863 tgaagacatgtttgaaattgtttgaggtatg 25419893  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 25500808 - 25500972
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| |||||||| |||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  |||||||||||| |||||||| | ||| ||||||    
T  25500808 aggagtaataaatcctatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacagaatatcagggctagcattacc 25500905  T
Q  170 tgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||| | |  |||| | | |||||||||||| ||||  |||||||||| ||||||||||    
T  25500906 tgaaaagtagttaagttgtaaagcaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 25500972  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 24890804 - 24890640
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| ||||||||  ||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| ||||||    
T  24890804 aggagtaataaatccaatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacc 24890707  T
Q  170 tgaaaagtagttga-atgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||| | ||| |||| | | |||||||||||| ||||  |||||||||| ||||||||||    
T  24890706 tgaaaagtagttaagatg-taaaacaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 24890640  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25428106 - 25428233
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatga--taaaccgatatattcaa 204  Q
    ||||||||||| ||||||||||||| |  ||||||||||||||||||||| | ||| ||||||||||||||||||  ||||  |||| | | ||||||||    
T  25428106 aaatagtgtgaatacaagaaatataga--aaatatgacacataatatcagagctagcattacctgaaaagtagtt--atgatgtaaatcaagatattcaa 25428201  T
Q  205 gtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||| ||||  |||||||||| ||||||||||    
T  25428202 gtgaagacatgtttgaaattgtttgaggtatg 25428233  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 25485695 - 25485808
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagt 206  Q
    ||||||||||| ||||||||||||| |  |||||||||||||||||| || ||| | ||||||||||||||||||| | |||||| | | ||||||||||    
T  25485695 aaatagtgtgaatacaagaaatataga--aaatatgacacataatattagagttggtattacctgaaaagtagttggaagataaatctagatattcaagt 25485792  T
Q  207 gaggacaaatttgaaa 222  Q
    || ||||  |||||||    
T  25485793 gaagacatgtttgaaa 25485808  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 25635083 - 25635247
Alignment:
Q  71 aggaggaataaatcttatatt-aaattctaacatctgaaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacc 169  Q
    ||||| |||||||| |||||| ||||| ||| |||  ||||||||||| ||||||||||||| |  |||||||||||| || ||||  | |||| |||||    
T  25635083 aggagtaataaatcctatattgaaattataaaatcataaatagtgtgaatacaagaaatataga--aaatatgacacagaaaatcaaagctaggtttacc 25635180  T
Q  170 tgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||||||||  |   |||||| | |||||||||||| ||||  |||||||||| ||||||||||    
T  25635181 tgaaaagtagttatactgtaaaccaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 25635247  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 25825532 - 25825659
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttga-atgataaaccgatatattcaag 205  Q
    ||||||||||| ||||||||||||| |  |||||||||||| |||||||| | ||| |||||||||||||||||| | |||  ||| | | |||||||||    
T  25825532 aaatagtgtgaatacaagaaatataga--aaatatgacacagaatatcagagctagcattacctgaaaagtagttaagatg-gaaaacaagatattcaag 25825628  T
Q  206 tgaggacaaatttgaaattgattgaggtatg 236  Q
    ||| ||||  |||||||||| ||||||||||    
T  25825629 tgaagacatgtttgaaattgtttgaggtatg 25825659  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 24917423 - 24917354
Alignment:
Q  167 acctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||||||||||||||||| | |||||| | |||||||||||| ||||  |||||||||| ||||||||||    
T  24917423 acctgaaaagtagttgaaaggtaaaccaagatattcaagtgaagacatgtttgaaattgtttgaggtatg 24917354  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 22881000 - 22880931
Alignment:
Q  166 tacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtat 235  Q
    ||||||||||||||||  | || || |||| |||||||||||| |||| ||||||||||| |||||||||    
T  22881000 tacctgaaaagtagttagaagagaagccgacatattcaagtgaagacatatttgaaattgtttgaggtat 22880931  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25485828 - 25485884
Alignment:
Q  14 agacaacttgttcatactaatgtccaatactttcaactgatgaaggttaccgataga 70  Q
    |||||| |||||| ||||||| |||||||  ||||||||||||||| ||||||||||    
T  25485828 agacaaattgttcttactaatttccaataacttcaactgatgaaggctaccgataga 25485884  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 25710701 - 25710798
Alignment:
Q  139 tatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    |||| |||||||||| || | ||||| |||||||||||||||| |  | ||||  ||||| ||||||||| ||||  ||| |||||| ||||||||||    
T  25710701 tatgtcacataatattagagctaggagtacctgaaaagtagttaacagctaaattgatatgttcaagtgaagacatgtttaaaattgtttgaggtatg 25710798  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25738113 - 25738169
Alignment:
Q  14 agacaacttgttcatactaatgtccaatactttcaactgatgaaggttaccgataga 70  Q
    ||||| |||||||  || ||| |||||| |||||||||||||||||||||| |||||    
T  25738113 agacatcttgttctgaccaatttccaattctttcaactgatgaaggttaccaataga 25738169  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 23394666 - 23394577
Alignment:
Q  147 ataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagtgaggacaaatttgaaattgattgaggtatg 236  Q
    ||||||| || ||||||| ||||||||||||||||  | |||||||| ||||||| |||||| ||||  |||||||||| ||||||||||    
T  23394666 ataatattagagttaggagtacctgaaaagtagttagaagataaaccaatatatttaagtgaagacatgtttgaaattgtttgaggtatg 23394577  T

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Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 41633 - 41506
Alignment:
Q  107 aaatagtgtgactacaagaaatatatagcaaatatgacacataatatcagtgttaggattacctgaaaagtagttgaatgataaaccgatatattcaagt 206  Q
    ||||||||||| || |||||||||  |  ||||||| ||||||||||||| | | | ||||||||||||||||||| | |||||| ||| |||||||||     
T  41633 aaatagtgtgaatataagaaatattga--aaatatgccacataatatcagagcttgcattacctgaaaagtagttggacgataaatcgagatattcaaga 41536  T
Q  207 gaggacaaatttgaaattgattgaggtatg 236  Q
    || ||||  ||||||| |  ||||||||||    
T  41535 gaagacatgtttgaaactccttgaggtatg 41506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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