View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0407_high_6 (Length: 237)

Name: NF0407_high_6
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0407_high_6
NF0407_high_6
[»] chr3 (3 HSPs)
chr3 (8-225)||(44914629-44914846)
chr3 (11-83)||(44885390-44885462)
chr3 (14-92)||(44898721-44898799)
[»] chr7 (2 HSPs)
chr7 (162-222)||(41042588-41042648)
chr7 (8-82)||(46562120-46562194)
[»] chr6 (2 HSPs)
chr6 (162-206)||(3113135-3113179)
chr6 (162-206)||(24762228-24762272)
[»] chr8 (1 HSPs)
chr8 (8-88)||(39982631-39982711)
[»] chr1 (1 HSPs)
chr1 (164-212)||(27423761-27423809)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 44914629 - 44914846
Alignment:
Q  8 atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagttttacagaccgttcttcatttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44914629 atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagttttacagaccgttcttcatttg 44914728  T
Q  108 tgagcgacaagattagaaaactaatctnnnnnnnnnttatagtggcaactggtgcatggttatcactatcttacgatacatgcgagccaaatctcgattc 207  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44914729 tgagcgacaagattagaaaactaatctaaaaaaaaattatagtggcaactggtgcatggttatcactatcttacgatacatgcgagccaaatctcgattc 44914828  T
Q  208 gatactaaattgaaccta 225  Q
    ||||||||||||||||||    
T  44914829 gatactaaattgaaccta 44914846  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 44885390 - 44885462
Alignment:
Q  11 acatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaa 83  Q
    |||||||| |||| ||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  44885390 acatggctcaggagcaagaccaagctaggcattgttgttccttttaatgacaacctcaacttccacaaggtaa 44885462  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 44898721 - 44898799
Alignment:
Q  14 tggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagttttacag 92  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||| ||| |||||| ||| ||||    
T  44898721 tggcttagggacaagaccaagctaggcattgctgttccttttgatgacaacctccactttcaccaggtaattttaacag 44898799  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 41042588 - 41042648
Alignment:
Q  162 catggttatcactatcttacgatacatgcgagccaaatctcgattcgatactaaattgaac 222  Q
    ||||||||||| |||||||||||||||||||| |  |||| |||||||||  |||||||||    
T  41042588 catggttatcagtatcttacgatacatgcgagtcgtatcttgattcgatagaaaattgaac 41042648  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 46562194 - 46562120
Alignment:
Q  8 atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggta 82  Q
    ||||| ||||| || | |||||||||| ||||  ||| |||||| |||||||||||| ||||||| |||||||||    
T  46562194 atcacttggctcagaagcaagaccaaattaggagttgttgttccctttgatgataacatcaactttcacaaggta 46562120  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 3113135 - 3113179
Alignment:
Q  162 catggttatcactatcttacgatacatgcgagccaaatctcgatt 206  Q
    ||||||||||| |||||||||||||||||||| || |||||||||    
T  3113135 catggttatcagtatcttacgatacatgcgagtcatatctcgatt 3113179  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 24762228 - 24762272
Alignment:
Q  162 catggttatcactatcttacgatacatgcgagccaaatctcgatt 206  Q
    ||||||||||| ||||||||||||||||| || || |||||||||    
T  24762228 catggttatcagtatcttacgatacatgcaagtcatatctcgatt 24762272  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 39982631 - 39982711
Alignment:
Q  8 atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagtttt 88  Q
    ||||| ||||| ||||| |||||||| ||||||  |  ||||||||||||||||  |||||| || |||||||||| ||||    
T  39982631 atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaattttt 39982711  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 27423809 - 27423761
Alignment:
Q  164 tggttatcactatcttacgatacatgcgagccaaatctcgattcgatac 212  Q
    ||||||||| ||||||||||||||||| ||||| | | |||||||||||    
T  27423809 tggttatcaatatcttacgatacatgcaagccataccacgattcgatac 27423761  T

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