View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0407_low_1 (Length: 567)
Name: NF0407_low_1
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0407_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 104 - 403
Target Start/End: Complemental strand, 2313544 - 2313245
Alignment:
| Q |
104 |
agtataacaattcatgatacctcaggaccaccagctaaggtgaagtacaagcctttcacaggatgattagccaaagacatttgttgaactggtccaacca |
203 |
Q |
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| T |
2313544 |
agtataacaattcatgatacctcaggaccaccagctaaggtgaagtacaagcctttcacaggatgattagccaaagacatttgttgaactggtccaacca |
2313445 |
T |
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| Q |
204 |
aattggtaactactgtacttgacattgttattgtcctcctaatatgttgagctactgcctgcatacaacaacaataactaacctcaacaatcttcataat |
303 |
Q |
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| T |
2313444 |
aattggtaactactgtacttgacattgttattgtcctcctaatatgttgagctactgcctgcatacaacaacaataactaacttcaataatctttgtagt |
2313345 |
T |
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| Q |
304 |
tggattgtagaattctaattaaaaatatttaattacagttttgatccactattttactcgctcgccaaatttttccttatttttaaaattcatatttttg |
403 |
Q |
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| T |
2313344 |
tggattataacattctaatcaaaaatatttaattacagttttgatccgctattttactcgctcttgaaatttttcctcatttttaaaatccatagttttg |
2313245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 2312900 - 2312836
Alignment:
| Q |
493 |
tctaacctcttgtcctctgagcttgccttcaatgtccaaaagtgtccctgtaagagcaacagcta |
557 |
Q |
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| T |
2312900 |
tctaacctcttgtcctctgagtttgccttcaatgtccaaaagtgtccctgtaagagccacagcta |
2312836 |
T |
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