View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0407_low_2 (Length: 415)
Name: NF0407_low_2
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0407_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 35173734 - 35173421
Alignment:
| Q |
17 |
ctgtgaaagcaagatcttgtggtaacatttcaaccatcatttcaccaaacttgcctaagttaaaatcttgaatggaaatttttctggatccggtaattga |
116 |
Q |
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| T |
35173734 |
ctgtgaaagcaagatcttgtggtaacatttcaaccatcatttcaccaaacttgcctaagttaaaatcttgaatggaaatttttctggatctggtaattga |
35173635 |
T |
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| Q |
117 |
gtcaaaccccattttcctattagtcttgtttcgaggctctggaagattgaaaaatgttatagctatgatgaaaatgcaacaaactgttaacagaatggtt |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35173634 |
gtcaaaccccattttcctattagtcttgttttgaggctctggaagattgaaaaatgttatagctatgatgaaaatgcaacaaactgttaacagaatggtt |
35173535 |
T |
|
| Q |
217 |
ataagagcgattgaatgcttcaagaaatgatgcttcttcattttgattaaatctgatattccacttgatgaattgttgctagttgtgaaaataaaattga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35173534 |
ataagagcgattgaatgcttcaagaaatgatgcttcttcattttgattaaatctgatattccacttgatgaattgttgctagttgtgaaaataaaattga |
35173435 |
T |
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| Q |
317 |
caaatttttggctt |
330 |
Q |
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|||||||||||||| |
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| T |
35173434 |
caaatttttggctt |
35173421 |
T |
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