View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0407_low_3 (Length: 350)
Name: NF0407_low_3
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0407_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 7636235 - 7636415
Alignment:
| Q |
75 |
gagtgagatgaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
174 |
Q |
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| T |
7636235 |
gagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
7636334 |
T |
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| Q |
175 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttccttt |
255 |
Q |
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| T |
7636335 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttccttt |
7636415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 7629452 - 7629632
Alignment:
| Q |
75 |
gagtgagatgaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
174 |
Q |
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||||||||| |||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7629452 |
gagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaata |
7629551 |
T |
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| Q |
175 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttccttt |
255 |
Q |
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| T |
7629552 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttccttt |
7629632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 7623143 - 7623323
Alignment:
| Q |
75 |
gagtgagatgaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
174 |
Q |
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|||| |||| |||||||||||||| |||||||||||||||||| || ||||||| ||||| | |||||||| ||||| ||||||||| ||| |||||| |
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| T |
7623143 |
gagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttcttgctccttggttttaggctttgttgaatt |
7623242 |
T |
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| Q |
175 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttccttt |
255 |
Q |
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| T |
7623243 |
atccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttccttt |
7623323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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