View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0407_low_5 (Length: 267)
Name: NF0407_low_5
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0407_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 40414936 - 40415128
Alignment:
| Q |
46 |
catttcccatacactactatgaaggtaatttctgaaaatcctataatgttcataaagtccaccttcaaccgtaactacgctttttctattattgatacaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||| |
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| T |
40414936 |
catttcccatacactactatgaaggtaatttctgaaaatcctataatgttcataaagttcaatttcaaccgtaaccatgctttttctattattgatacaa |
40415035 |
T |
|
| Q |
146 |
ttccagctccgactaggcgagcaccgcgctctgttactatgtcgcagacctcgacaaccacttcgcgtgccattggagttgtgctagtgatctg |
239 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40415036 |
ttccagc-ccgactaggcgagcaccgcgctctgttactatgttgcagacctcgacaaccacttcgcgtgccattggagttgtgctagtgatctg |
40415128 |
T |
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