View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0407_low_6 (Length: 262)

Name: NF0407_low_6
Description: NF0407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0407_low_6
NF0407_low_6
[»] chr3 (8 HSPs)
chr3 (1-234)||(39972997-39973253)
chr3 (1-89)||(4037146-4037234)
chr3 (1-84)||(49279494-49279577)
chr3 (1-84)||(11233511-11233594)
chr3 (3-89)||(39994198-39994284)
chr3 (1-59)||(10688613-10688671)
chr3 (51-89)||(39350780-39350818)
chr3 (3-43)||(782258-782298)
[»] chr7 (10 HSPs)
chr7 (1-89)||(18867925-18868013)
chr7 (1-89)||(46425315-46425403)
chr7 (1-79)||(16876724-16876802)
chr7 (1-79)||(23185910-23185988)
chr7 (9-89)||(34328118-34328198)
chr7 (1-60)||(2628463-2628522)
chr7 (3-59)||(27311802-27311858)
chr7 (7-72)||(48068390-48068455)
chr7 (3-59)||(42691097-42691153)
chr7 (3-59)||(42971671-42971727)
[»] chr6 (8 HSPs)
chr6 (1-89)||(9928266-9928354)
chr6 (5-89)||(7506641-7506725)
chr6 (1-89)||(22469704-22469792)
chr6 (1-84)||(31743865-31743946)
chr6 (4-60)||(6139326-6139382)
chr6 (9-59)||(9549379-9549429)
chr6 (5-59)||(28067321-28067375)
chr6 (23-59)||(28963618-28963654)
[»] chr1 (13 HSPs)
chr1 (1-89)||(27907708-27907796)
chr1 (3-89)||(48843383-48843469)
chr1 (1-89)||(27032297-27032385)
chr1 (1-84)||(51748557-51748640)
chr1 (1-59)||(48915013-48915071)
chr1 (1-59)||(48915203-48915261)
chr1 (1-59)||(48915404-48915462)
chr1 (1-58)||(19456339-19456396)
chr1 (1-59)||(19431418-19431476)
chr1 (1-58)||(50539757-50539814)
chr1 (3-43)||(5398066-5398106)
chr1 (6-59)||(24671166-24671219)
chr1 (23-59)||(46325618-46325654)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-89)||(15096-15184)
[»] chr2 (12 HSPs)
chr2 (5-89)||(19037044-19037128)
chr2 (1-89)||(15141885-15141973)
chr2 (1-73)||(3496792-3496864)
chr2 (1-59)||(11226151-11226209)
chr2 (1-59)||(23395938-23395996)
chr2 (1-59)||(41069701-41069759)
chr2 (4-59)||(32832621-32832676)
chr2 (9-44)||(34392353-34392388)
chr2 (1-59)||(6752102-6752160)
chr2 (3-57)||(1208623-1208677)
chr2 (1-42)||(31750469-31750510)
chr2 (1-30)||(39707457-39707486)
[»] chr8 (6 HSPs)
chr8 (1-84)||(33938595-33938678)
chr8 (5-83)||(16467608-16467686)
chr8 (1-59)||(4834998-4835056)
chr8 (9-59)||(44132901-44132951)
chr8 (5-83)||(16499813-16499895)
chr8 (9-83)||(16508738-16508814)
[»] chr5 (5 HSPs)
chr5 (9-89)||(37480295-37480375)
chr5 (1-84)||(37515565-37515648)
chr5 (5-89)||(2651631-2651717)
chr5 (4-59)||(19824592-19824647)
chr5 (3-44)||(21355259-21355300)
[»] chr4 (8 HSPs)
chr4 (3-84)||(9116237-9116318)
chr4 (1-59)||(46079368-46079426)
chr4 (1-59)||(29544190-29544248)
chr4 (1-55)||(52673230-52673284)
chr4 (1-60)||(53406516-53406575)
chr4 (9-59)||(50041842-50041892)
chr4 (9-59)||(50049064-50049114)
chr4 (23-60)||(5052115-5052152)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39972997 - 39973253
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaaccta----------------tg 84  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||                ||    
T  39972997 tgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattctctttcatctaaaatgaacctatatcaccaaaaaactatg 39973096  T
Q  85 gcacccat-------ccctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgtgattgtgaagtaacttaatactatgaggta 177  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39973097 gcacccaagtatttcccctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgtgattgtgaagtaacttaatactatgaggta 39973196  T
Q  178 aaagcaattttaccgcggtattagcaactctattagtagcaagttgttgcacttttt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39973197 aaagcaattttaccgcggtattagcaactctattagtagcaagttgttgcacttttt 39973253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4037146 - 4037234
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  4037146 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 4037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 49279494 - 49279577
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||| ||||    
T  49279494 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacttatg 49279577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11233511 - 11233594
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||| ||| ||||    
T  11233511 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaataaacttatg 11233594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 39994198 - 39994284
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||| ||| |||| ||||    
T  39994198 tctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaattaacttatgtcacc 39994284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10688613 - 10688671
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  10688613 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 10688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 39350818 - 39350780
Alignment:
Q  51 ttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39350818 ttaatcattctctttcatctaaaatgaacctatggcacc 39350780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 782258 - 782298
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaata 43  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  782258 tctatctctctcctaacaaaacattctctctcatcaaaata 782298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18868013 - 18867925
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  18868013 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 18867925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 46425403 - 46425315
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  46425403 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 46425315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16876802 - 16876724
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 79  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  16876802 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 16876724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23185988 - 23185910
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 79  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  23185988 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 23185910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 34328118 - 34328198
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  34328118 tctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 34328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2628522 - 2628463
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  2628522 tgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcattt 2628463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 27311858 - 27311802
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||| | | |||||||| ||||||||||||| ||||||||||||    
T  27311858 tctatctctctcttaactaataattctctcacatcaaaataaattattttaatcatt 27311802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 48068455 - 48068390
Alignment:
Q  7 tctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaa 72  Q
    ||||||||||||| ||| ||| ||||||||| ||||||   ||||||||||| |||| ||||||||    
T  48068455 tctctctcttaaccacttattatctctcatctaaataatctattttaatcatcttctctcatctaa 48068390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 42691153 - 42691097
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||| |||  | | |||||||||||||||||||| | ||||||||||||    
T  42691153 tctatctctctcctaattaataattctctctcatcaaaataatttattttaatcatt 42691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 42971727 - 42971671
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||| |   ||||||||||||| |||||| | ||||||||||||    
T  42971727 tctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcatt 42971671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9928266 - 9928354
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  9928266 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 9928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 7506641 - 7506725
Alignment:
Q  5 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||| |||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacatatggcacc 7506725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22469704 - 22469792
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  22469704 tgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 22469792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31743865 - 31743946
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||||||| ||||||||| ||||||||  ||| |||||| | |||||||||||| ||||||||||||||||||| ||||    
T  31743865 tgtctatctctcttttaacaacttattctctc--atctaaataatttattttaatcattctctttcatctaaaatgaacttatg 31743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 6139326 - 6139382
Alignment:
Q  4 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 60  Q
    |||||||||| ||||| | ||||||||||||||| |||||| | |||||||||||||    
T  6139326 ctatctctcttttaaccattcattctctctcatctaaataatttattttaatcattt 6139382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 9549379 - 9549429
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||||||||||| ||  |||||| | ||||||||||||    
T  9549379 tctctcttaacaactcattctctctaatttaaataatttattttaatcatt 9549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 28067321 - 28067375
Alignment:
Q  5 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||  |||| | |||||||||||||||||||||| | ||||||||||||    
T  28067321 tatctctcttctaaccaatcattctctctcatcaaaataatttattttaatcatt 28067375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 28963654 - 28963618
Alignment:
Q  23 tcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||||||||| | ||||||||||||    
T  28963654 tcattctctctcatcaaaataagttattttaatcatt 28963618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27907708 - 27907796
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  27907708 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 27907796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 48843383 - 48843469
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  48843383 tctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 48843469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27032385 - 27032297
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||| |||||||||| |||| ||||    
T  27032385 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatataaaatgaacatatgtcacc 27032297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 51748557 - 51748640
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||| | |||||||||||| |||||||| ||||||||| |||||    
T  51748557 tgtctatctttcttttaacaactcattctctctcatctaaataatttattttaatcattctctttcatttaaaatgaatctatg 51748640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48915071 - 48915013
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915071 tgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48915261 - 48915203
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915261 tgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48915462 - 48915404
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915462 tgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19456396 - 19456339
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 58  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||| | |||||||||||    
T  19456396 tgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19431476 - 19431418
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||| ||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  19431476 tgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcatt 19431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50539814 - 50539757
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 58  Q
    ||||||||||||||||||||||||||||||| | ||  |||||| | |||||||||||    
T  50539814 tgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcat 50539757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 5398106 - 5398066
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaata 43  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  5398106 tctatctctctcttaaccactcattctctctcatctaaata 5398066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 24671166 - 24671219
Alignment:
Q  6 atctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||| ||||||||| ||||||||||||||||  |||||| | ||||||||||||    
T  24671166 atctttctcttaaccactcattctctctcatttaaataatttattttaatcatt 24671219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 46325654 - 46325618
Alignment:
Q  23 tcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||||||||| | ||||||||||||    
T  46325654 tcattctctctcatcaaaataacttattttaatcatt 46325618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15096 - 15184
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||| ||||    
T  15096 tgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaatcattatctttcatctaaaatgaacatatgtcacc 15184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 19037128 - 19037044
Alignment:
Q  5 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 19037044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15141885 - 15141973
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  15141885 tgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 15141973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3496864 - 3496792
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaa 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||||||||    
T  3496864 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatctaaa 3496792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11226151 - 11226209
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  11226151 tgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 11226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23395938 - 23395996
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||    
T  23395938 tgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcatt 23395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41069759 - 41069701
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||| | ||||||||||||    
T  41069759 tgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcatt 41069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 32832676 - 32832621
Alignment:
Q  4 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcatt 32832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 34392353 - 34392388
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataa 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  34392353 tctctcttaacaactcattctctctcatcaaaataa 34392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6752160 - 6752102
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||||||||||||| | | ||||||||| |||||| | ||||||||||||    
T  6752160 tgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcatt 6752102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1208623 - 1208677
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatca 57  Q
    ||||||||||||||||| | | |||||||||||| ||||||| | ||||||||||    
T  1208623 tctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31750469 - 31750510
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaat 42  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  31750469 tgtctatctctctcttaacaattcattttctctcatctaaat 31750510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39707486 - 39707457
Alignment:
Q  1 tgtctatctctctcttaacaactcattctc 30  Q
    ||||||||||||||||||||||||||||||    
T  39707486 tgtctatctctctcttaacaactcattctc 39707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33938678 - 33938595
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||| ||||||||||||||||||    
T  33938678 tgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattatcttttatctaaaatgaacctatg 33938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 16467608 - 16467686
Alignment:
Q  5 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctat 83  Q
    |||||||||||||| || | ||||||||||||| |||||| | | |||||||||| |||||||| ||||||||||||||    
T  16467608 tatctctctcttaataatttattctctctcatctaaataatttagtttaatcattctctttcatataaaatgaacctat 16467686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4835056 - 4834998
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||| ||||||||||||||||||||| ||| | |||||| | ||||||||||||    
T  4835056 tgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcatt 4834998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 44132951 - 44132901
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  44132951 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 44132901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 16499895 - 16499813
Alignment:
Q  5 tatctctctcttaacaactcattctctctc----atcaaaataaatcattttaatcattttctttcatctaaaatgaacctat 83  Q
    |||||||||||||| |||| ||||||||||    ||| |||||| | | |||||||||| ||| |||| ||||||||||||||    
T  16499895 tatctctctcttaataacttattctctctctctcatctaaataatttagtttaatcattctctctcatataaaatgaacctat 16499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 16508814 - 16508738
Alignment:
Q  9 tctctcttaacaactcattctctctc--atcaaaataaatcattttaatcattttctttcatctaaaatgaacctat 83  Q
    |||||||||| |||| ||||||||||  ||| |||||| | | |||||||||| ||| |||| ||||||||||||||    
T  16508814 tctctcttaataacttattctctctctcatctaaataatttagtttaatcattctctctcatataaaatgaacctat 16508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 37480295 - 37480375
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| |||| ||||    
T  37480295 tctctcttaacaactcattctctctcatctaagtaatttattttaatcattttctttcatctaaaatgaacttatgtcacc 37480375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37515648 - 37515565
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| ||||| ||||||||||||| ||||    
T  37515648 tgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctcttttatctaaaatgaacttatg 37515565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 2651631 - 2651717
Alignment:
Q  5 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt--ttctttcatctaaaatgaacctatggcacc 89  Q
    ||||||||||||| ||||  ||||| ||||||| |||||| | ||||||||||||  ||| | |||||||||||||| |||| ||||    
T  2651631 tatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatctaaaatgaacttatgtcacc 2651717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 19824592 - 19824647
Alignment:
Q  4 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    |||||||||||| ||| | ||||||||||||||| |||||| | ||||||||||||    
T  19824592 ctatctctctctaaaccattcattctctctcatctaaataatttattttaatcatt 19824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 21355300 - 21355259
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataa 44  Q
    ||||||||||||||||| | ||||||||||||||| ||||||    
T  21355300 tctatctctctcttaaccattcattctctctcatctaaataa 21355259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 9116318 - 9116237
Alignment:
Q  3 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 84  Q
    ||||||||| | ||||||||||||||||||||||  |||||| | |||||||||||| ||||||||||||||||||||||||    
T  9116318 tctatctcttttttaacaactcattctctctcatttaaataatttattttaatcattctctttcatctaaaatgaacctatg 9116237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46079426 - 46079368
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  46079426 tgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcatt 46079368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29544248 - 29544190
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||||    
T  29544248 tgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcatt 29544190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 52673284 - 52673230
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaat 55  Q
    ||||||||||||||||| ||||  |||||||||||||||||||| | ||||||||    
T  52673284 tgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaat 52673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 53406575 - 53406516
Alignment:
Q  1 tgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 60  Q
    ||||||||||||||||||||| ||||| ||||| ||| |||||| | |||||||| ||||    
T  53406575 tgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattattt 53406516  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 50041892 - 50041842
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50041892 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50041842  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 50049114 - 50049064
Alignment:
Q  9 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 59  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50049114 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50049064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 5052115 - 5052152
Alignment:
Q  23 tcattctctctcatcaaaataaatcattttaatcattt 60  Q
    |||||||||||||||||||||| | |||||||||||||    
T  5052115 tcattctctctcatcaaaataatttattttaatcattt 5052152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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