View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0408_high_4 (Length: 302)

Name: NF0408_high_4
Description: NF0408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0408_high_4
NF0408_high_4
[»] chr1 (18 HSPs)
chr1 (60-224)||(29984261-29984424)
chr1 (60-224)||(15545946-15546109)
chr1 (98-302)||(17317484-17317673)
chr1 (79-224)||(20405874-20406018)
chr1 (111-217)||(22045338-22045444)
chr1 (115-195)||(16969370-16969451)
chr1 (111-193)||(16153342-16153425)
chr1 (108-206)||(19957584-19957682)
chr1 (111-206)||(25220869-25220964)
chr1 (62-180)||(18935184-18935306)
chr1 (111-206)||(23477015-23477110)
chr1 (231-302)||(29984196-29984267)
chr1 (79-147)||(17774007-17774076)
chr1 (166-195)||(22852859-22852888)
chr1 (81-224)||(25380015-25380156)
chr1 (231-299)||(15546103-15546170)
chr1 (166-194)||(17495907-17495935)
chr1 (167-195)||(21217826-21217854)
[»] chr5 (20 HSPs)
chr5 (60-288)||(16700722-16700937)
chr5 (60-224)||(23274354-23274518)
chr5 (72-302)||(27736027-27736241)
chr5 (79-224)||(22846964-22847110)
chr5 (111-215)||(19526999-19527103)
chr5 (111-213)||(24511327-24511429)
chr5 (60-149)||(18338730-18338819)
chr5 (111-206)||(25087414-25087509)
chr5 (111-206)||(25145383-25145478)
chr5 (111-217)||(18958210-18958316)
chr5 (111-217)||(20972013-20972118)
chr5 (111-217)||(25917230-25917336)
chr5 (111-190)||(24670063-24670143)
chr5 (111-190)||(24739832-24739912)
chr5 (111-190)||(24752601-24752681)
chr5 (105-206)||(24129311-24129413)
chr5 (111-206)||(24660556-24660651)
chr5 (79-123)||(20057502-20057546)
chr5 (167-195)||(22442037-22442065)
chr5 (242-302)||(23274289-23274349)
[»] chr2 (9 HSPs)
chr2 (60-224)||(22684136-22684299)
chr2 (60-217)||(29842083-29842242)
chr2 (105-206)||(25906998-25907099)
chr2 (118-217)||(26023217-26023316)
chr2 (111-195)||(23663185-23663270)
chr2 (111-195)||(24373604-24373689)
chr2 (166-206)||(39666929-39666968)
chr2 (81-224)||(17980154-17980293)
chr2 (83-147)||(27488217-27488282)
[»] scaffold0561 (1 HSPs)
scaffold0561 (106-302)||(392-574)
[»] chr8 (7 HSPs)
chr8 (60-224)||(16648033-16648196)
chr8 (111-191)||(17125551-17125632)
chr8 (108-195)||(19303544-19303632)
chr8 (111-195)||(18426464-18426550)
chr8 (111-195)||(14992580-14992664)
chr8 (78-144)||(17816116-17816185)
chr8 (231-288)||(24460546-24460603)
[»] scaffold0103 (3 HSPs)
scaffold0103 (60-224)||(39694-39856)
scaffold0103 (60-224)||(35379-35544)
scaffold0103 (231-302)||(35314-35385)
[»] chr3 (16 HSPs)
chr3 (94-302)||(14889573-14889767)
chr3 (60-195)||(24698074-24698210)
chr3 (112-217)||(24507586-24507691)
chr3 (111-217)||(1343748-1343854)
chr3 (111-217)||(25921801-25921906)
chr3 (109-204)||(13607436-13607531)
chr3 (105-195)||(8942665-8942755)
chr3 (105-195)||(13885565-13885653)
chr3 (105-195)||(20245908-20245999)
chr3 (60-123)||(42369263-42369326)
chr3 (105-217)||(4831388-4831500)
chr3 (112-195)||(19614023-19614107)
chr3 (58-182)||(16973907-16974035)
chr3 (166-195)||(13904962-13904991)
chr3 (166-195)||(13904993-13905022)
chr3 (111-195)||(23295731-23295816)
[»] chr4 (7 HSPs)
chr4 (60-194)||(20323989-20324122)
chr4 (79-217)||(11554518-11554656)
chr4 (129-224)||(13524229-13524323)
chr4 (111-206)||(16836091-16836186)
chr4 (111-190)||(7310768-7310848)
chr4 (108-206)||(10492213-10492311)
chr4 (81-147)||(16656380-16656446)
[»] scaffold0111 (1 HSPs)
scaffold0111 (78-191)||(27680-27792)
[»] chr7 (21 HSPs)
chr7 (60-224)||(10375828-10375990)
chr7 (79-217)||(10939418-10939558)
chr7 (60-217)||(30238930-30239092)
chr7 (105-195)||(16223384-16223475)
chr7 (129-224)||(9653204-9653298)
chr7 (111-195)||(1376237-1376322)
chr7 (114-195)||(5223965-5224047)
chr7 (80-224)||(19335682-19335824)
chr7 (111-195)||(11353054-11353139)
chr7 (60-185)||(30253354-30253485)
chr7 (30-69)||(43923848-43923887)
chr7 (82-194)||(19018547-19018658)
chr7 (111-195)||(11347335-11347419)
chr7 (111-195)||(16775893-16775978)
chr7 (152-217)||(10878090-10878155)
chr7 (152-221)||(10203712-10203780)
chr7 (238-302)||(10203644-10203708)
chr7 (167-195)||(11580001-11580029)
chr7 (152-188)||(14971480-14971516)
chr7 (152-188)||(15400956-15400992)
chr7 (163-195)||(19329035-19329067)
[»] chr6 (13 HSPs)
chr6 (60-194)||(16598405-16598538)
chr6 (111-195)||(18564962-18565046)
chr6 (78-194)||(25927768-25927883)
chr6 (111-191)||(17583232-17583313)
chr6 (111-215)||(12475550-12475654)
chr6 (113-206)||(16373696-16373789)
chr6 (111-206)||(10746910-10747005)
chr6 (111-204)||(24001203-24001296)
chr6 (81-147)||(18561563-18561630)
chr6 (111-191)||(20403042-20403123)
chr6 (167-195)||(15935233-15935261)
chr6 (233-301)||(16598563-16598631)
chr6 (167-195)||(19959081-19959109)
[»] scaffold0125 (1 HSPs)
scaffold0125 (153-302)||(6195-6330)
[»] scaffold0018 (1 HSPs)
scaffold0018 (111-195)||(63362-63447)
[»] scaffold0711 (1 HSPs)
scaffold0711 (111-217)||(3987-4093)
[»] scaffold0577 (1 HSPs)
scaffold0577 (105-195)||(856-947)
[»] scaffold0032 (1 HSPs)
scaffold0032 (152-224)||(70418-70489)
[»] scaffold1121 (1 HSPs)
scaffold1121 (115-195)||(1214-1295)
[»] scaffold0134 (1 HSPs)
scaffold0134 (154-217)||(42441-42502)
[»] scaffold0285 (1 HSPs)
scaffold0285 (111-195)||(20651-20735)
[»] scaffold0183 (1 HSPs)
scaffold0183 (111-195)||(13545-13630)
[»] scaffold0160 (1 HSPs)
scaffold0160 (111-195)||(6535-6619)
[»] scaffold0035 (1 HSPs)
scaffold0035 (154-195)||(98146-98187)
[»] scaffold0023 (1 HSPs)
scaffold0023 (163-206)||(97161-97204)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 29984424 - 29984261
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29984424 tttcttagaatcactttgatctttgagtcatggattgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaaattaaggtt 29984325  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  29984324 ctaaagtgaagtgaataatctcattccacctcc-aaaggtcttgcgggttctttctaaagttctt 29984261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 15545946 - 15546109
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| |||||  |||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  15545946 tttcttaaaatcactttgttctttgagtcatagattgctaaagtgttatagagattgtaagttggttcattcaaggaaattgattggataaatcaagatt 15546045  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||    
T  15546046 ctaaagtgaagtgaataatctcattccacctcc-aaaggtcttaggagttctttctaaagttctt 15546109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 302
Target Start/End: Complemental strand, 17317673 - 17317484
Alignment:
Q  98 tagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaag 197  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||| || ||||| ||||   |||||||||||||||||||| ||||    
T  17317673 tagagtgctatagggattgtaaattggttcattcaaggaaattgattgggtaa-tcaatgtgctaaagtgaaaaaaataatctcattccacctcc-aaag 17317576  T
Q  198 gtcttggggcttctttctaaagttcttttttacagttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaa 297  Q
    || |||||| ||||||||||             ||||||||||||||||||| || ||||||||| | |||||||||| ||||||||||||  |||||||    
T  17317575 gtgttgggggttctttctaa-------------agttcttgtgttcaaggggatccaattgtcggacggagcatcgaagagttcgagtgaagaacttcaa 17317489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 20406018 - 20405874
Alignment:
Q  79 tctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataat 178  Q
    |||||||||||||| | | |  |||| ||||  ||||||||||||||| ||||||||||||||||||  ||| ||||||||||||| |||| ||||||||    
T  20406018 tctttgagtcatagatcgttgaagtgctatatcgattgtaagttggtttattcaaggaaattgattgaataaatcaaggttctaaagtgaaatgaataat 20405919  T
Q  179 ctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    || ||||||||||| ||||||||| ||| ||||| |||||||||||    
T  20405918 cttattccacctcc-aaaggtcttaggggttcttactaaagttctt 20405874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 22045338 - 22045444
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||||||| ||||||||||||  ||| ||  | ||||||||||||| |||||||||||||| |||||||||||| ||||||||||| | ||    
T  22045338 ggattgtaagttggttctttcaaggaaattagttgagtttaatcaaggttctaaagtgaagtgaataatcacattccacctcc-aaaggtcttggaggtt 22045436  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  22045437 ctttctaa 22045444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 16969370 - 16969451
Alignment:
Q  115 tgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||| | ||||||||||||||||||||  | ||||||||| ||| ||||||||||||||||||||||||||||||    
T  16969370 tgtaagttggtcctttcaaggaaattgattgggtttaatcaaggttccaaagtgaagtgaataatctcattccacctccaaa 16969451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 16153342 - 16153425
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctcca 193  Q
    |||||||||||||||||  |||||||||||| ||||| | | ||||||||| ||| ||||||||||||||||||||||||||||    
T  16153342 ggattgtaagttggttctctcaaggaaattggttgggcttaatcaaggttccaaagtgaagtgaataatctcattccacctcca 16153425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 19957682 - 19957584
Alignment:
Q  108 taaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    |||||||||||||||||||| |||||||| |||| ||||| | | |||||| || ||| |||||||||| |||||||||||||||| |||||||||||||    
T  19957682 taaggattgtaagttggttctttcaaggagattggttgggcttaatcaaggatccaaagtgaagtgaatgatctcattccacctcc-aaaggtcttgggg 19957584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 25220869 - 25220964
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||| |||||||||||  |||||||||||| ||||| | | |||| |||| ||| |||||||| |||||||||||||||||| |||||||||||||    
T  25220869 ggattataagttggttctctcaaggaaattggttgggcttaatcaaagttccaaagtgaagtgattaatctcattccacctcc-aaaggtcttgggg 25220964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 18935306 - 18935184
Alignment:
Q  62 tcttataattactttcatctttgagtcatagg--ttgctagagtgtta-taaggattgtaagttggttcattcaaggaaattgattggg-taagtcaagg 157  Q
    ||||||||| |||||   |||||||||||| |  ||||||| ||| || || ||||||||||||||||| ||||| ||||||||||||| | | ||||||    
T  18935306 tcttataatcactttgtgctttgagtcatatgatttgctagggtgctaatagggattgtaagttggttctttcaaagaaattgattgggcttaatcaagg 18935207  T
Q  158 ttctaaaatgaagtgaataatct 180  Q
    ||| ||| |||||||||||||||    
T  18935206 ttccaaagtgaagtgaataatct 18935184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 23477015 - 23477110
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| |  ||| | ||||||||||||||||||||||||| |||||||||||||    
T  23477015 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggcttcaaagtaaagtgaataatctcattccacctcc-aaaggtcttgggg 23477110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 29984267 - 29984196
Alignment:
Q  231 agttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    ||||||||||||||||||  |||||||| | | | |||||||||| ||||||||||||  ||||||||||||    
T  29984267 agttcttgtgttcaagggcatctaattgccagacggagcatcgaagagttcgagtgaagaacttcaagggtt 29984196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 17774007 - 17774076
Alignment:
Q  79 tctttgagtcataggttgctagagtgttataaggattgtaagttgg-ttcattcaaggaaattgattggg 147  Q
    |||||||||||||| ||||||||||| |||  ||||||||  |||| ||||||||||||| |||||||||    
T  17774007 tctttgagtcatagattgctagagtgctatgtggattgtatattggtttcattcaaggaacttgattggg 17774076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 22852888 - 22852859
Alignment:
Q  166 tgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||||||||||||||||    
T  22852888 tgaagtgaataatctcattccacctccaaa 22852859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 25380015 - 25380156
Alignment:
Q  81 tttgagtcataggttgctagagtgttataaggattgtaagttggttcatt-caaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatc 179  Q
    |||||||||||| |||| |||||| |||| | ||||||||||| || ||| |||||| ||| |||| | |  |||||| |||||| |||| ||| ||||     
T  25380015 tttgagtcatagattgcaagagtgctataggaattgtaagttgattgatttcaaggatatttattgtgaa--tcaaggatctaaagtgaattgagtaatt 25380112  T
Q  180 tcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    |||||||||||| ||  | | |||||  |||||||||||||||||    
T  25380113 tcattccacctctaagcg-tattgggtgttctttctaaagttctt 25380156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 15546103 - 15546170
Alignment:
Q  231 agttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagg 299  Q
    ||||||||||||||||||| |||||||| |||  |||  |||||| ||||||||||||  |||||||||    
T  15546103 agttcttgtgttcaaggggatctaattgccgg-aagaagatcgaagagttcgagtgaagaacttcaagg 15546170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 17495935 - 17495907
Alignment:
Q  166 tgaagtgaataatctcattccacctccaa 194  Q
    |||||||||||||||||||||||||||||    
T  17495935 tgaagtgaataatctcattccacctccaa 17495907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 21217826 - 21217854
Alignment:
Q  167 gaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||||||||    
T  21217826 gaagtgaataatctcattccacctccaaa 21217854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 60 - 288
Target Start/End: Original strand, 16700722 - 16700937
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg-ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggt 158  Q
    ||||||| ||| |||||  ||||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  16700722 tttcttagaatcactttgttctttgagtcataagattgcgagagtgctatatggattgtaagttggttcattcaaggaaattgattgggtaaatcaaggt 16700821  T
Q  159 tctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttcttttttacagttcttgtgttcaagggggtctaattg 258  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||             ||||||||||||||||||| ||||||||    
T  16700822 tctaaagtgaagtgaataatctcattccccct-caaaaggtcttggggattctttctaa-------------agttcttgtgttcaaggggatctaattg 16700907  T
Q  259 tcggccagagcatcgaaaagttcgagtgaa 288  Q
     ||| | |||||||||||||||||||||||    
T  16700908 ccggacggagcatcgaaaagttcgagtgaa 16700937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 23274518 - 23274354
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg-ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggt 158  Q
    ||||||| ||| |||||  |||||||||| || | || |||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||    
T  23274518 tttcttagaatcactttgttctttgagtcctaagatttctagagtgctatagggattgtaagttggttcattcaaggaaattgattgggttaatcaaggt 23274419  T
Q  159 tctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  23274418 tctaaagtgaagtgaataatctcattccacctcc-aaaggtcttggcggttctttctaaagttctt 23274354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 302
Target Start/End: Complemental strand, 27736241 - 27736027
Alignment:
Q  72 actttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagt 171  Q
    ||||| ||| ||||||||||| ||||||||||| |||| |||||| |||||||||| ||||||||||||||||| |||| |||| |||||||| ||||||    
T  27736241 actttgatcgttgagtcatagattgctagagtgctatagggattgcaagttggttcgttcaaggaaattgattgagtaa-tcaaagttctaaagtgaagt 27736143  T
Q  172 gaataatctcattccacctccaaaaggtcttggggcttctttctaaagttcttttttacagttcttgtgttcaagggggtctaattgtcggccagagcat 271  Q
    |||||||||||||||||||   || ||  |||||| ||||||||||             | ||||||||||||||||| |||||||||||| | ||||||    
T  27736142 gaataatctcattccacct--taagggcattgggggttctttctaa-------------atttcttgtgttcaaggggatctaattgtcggacggagcat 27736058  T
Q  272 cgaaaagttcgagtgaattacttcaagggtt 302  Q
    | || ||||||||||||  ||||||||||||    
T  27736057 caaagagttcgagtgaagaacttcaagggtt 27736027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 22846964 - 22847110
Alignment:
Q  79 tctttgagtcatagg-ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataa 177  Q
    ||||||||||||| | ||||||||||  |||| |||||||||||||||||||||||  ||||||||||||| | |||| |||||||| |||||| |||||    
T  22846964 tctttgagtcataagattgctagagttctatatggattgtaagttggttcattcaacaaaattgattgggttaatcaatgttctaaagtgaagtaaataa 22847063  T
Q  178 tctcattccacctccaaaaggtctt-ggggcttctttctaaagttctt 224  Q
    ||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  22847064 tctcattccacct-ctaaaggtcttggggggttctttctaaagttctt 22847110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 19526999 - 19527103
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||||||| ||||||||||||| ||||| | | ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||    
T  19526999 ggattgtaagttggttctttcaaggaaattggttgggcttaatcaaggttccaaagtgaagtgaataatctcattccacctcc-aaaggtcttgggggtt 19527097  T
Q  210 ctttct 215  Q
    ||||||    
T  19527098 ctttct 19527103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 24511429 - 24511327
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||    
T  24511429 ggattgtaagttggttctttcaaggaaattgattgggcttaatcaaggttctaaaatgaagtgaataatatcattccacctgc-aaaggtcatgggggtt 24511331  T
Q  210 cttt 213  Q
    ||||    
T  24511330 cttt 24511327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 18338819 - 18338730
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggta 149  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||   |||||||||||||||| |||| |||||||||| ||||    
T  18338819 tttcttataatcactttgatctttgagtcatagattgctagagtgctatagaaattgtaagttggttcaatcaaagaaattgattcggta 18338730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 25087509 - 25087414
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||| ||||||||||||| |||| |  | ||||||||| ||| ||| || |||||||||||||||||||| |||||||||||||    
T  25087509 ggattgtaagttggttctttcaaggaaattggttggatttaatcaaggttccaaagtgaggttaataatctcattccacctcc-aaaggtcttgggg 25087414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 25145478 - 25145383
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||| ||||||||||||| |||| |  | ||||||||| ||| ||| || |||||||||||||||||||| |||||||||||||    
T  25145478 ggattgtaagttggttctttcaaggaaattggttggatttaatcaaggttccaaagtgaggttaataatctcattccacctcc-aaaggtcttgggg 25145383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 18958210 - 18958316
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||| ||| |||||| |||||| ||||| | | ||||||||||||| |||||||  ||||||||||||||||   ||||||||||||| ||    
T  18958210 ggattgtaagttgattctttcaagtaaattggttgggcttaatcaaggttctaaagtgaagtgggtaatctcattccacct-tgaaaggtcttgggggtt 18958308  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  18958309 ctttctaa 18958316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 20972013 - 20972118
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||||||| ||||| ||||||  ||||| | | |||||||| |||| ||||||| ||||||||||||||||| | ||||||||||||| ||    
T  20972013 ggattgtaagttggttctttcaatgaaattagttgggcttaatcaaggttataaagtgaagtgcataatctcattccaccttc-aaaggtcttgggg-tt 20972110  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  20972111 ctttctaa 20972118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 25917336 - 25917230
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||| |||||| |||| ||||||||||||| ||||| | | ||||||||||||| | |||||||||||||||||||| || |||||  |||||||| ||    
T  25917336 ggattataagtttgttctttcaaggaaattggttgggcttaatcaaggttctaaagtaaagtgaataatctcattccaact-caaaatttcttgggggtt 25917238  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  25917237 ctttctaa 25917230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 24670063 - 24670143
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacct 190  Q
    |||||||||||||||||||||||||| |||| ||||| | | |||||  || ||| |||||| ||||||||||||||||||    
T  24670063 ggattgtaagttggttcattcaaggagattggttgggcttaatcaagactccaaagtgaagtcaataatctcattccacct 24670143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 24739832 - 24739912
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacct 190  Q
    |||||||||||||||||||||||||| |||| ||||| | | |||||  || ||| |||||| ||||||||||||||||||    
T  24739832 ggattgtaagttggttcattcaaggagattggttgggcttaatcaagactccaaagtgaagtcaataatctcattccacct 24739912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 24752601 - 24752681
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacct 190  Q
    |||||||||||||||||||||||||| |||| ||||| | | |||||  || ||| |||||| ||||||||||||||||||    
T  24752601 ggattgtaagttggttcattcaaggagattggttgggcttaatcaagactccaaagtgaagtcaataatctcattccacct 24752681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 24129311 - 24129413
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaa-gtgaataatctcattccacctccaaaaggtctt 202  Q
    ||||| ||||||||| ||| |||  ||||||||||| |||||| | | ||||||||| ||| |||| ||||||||||||||||||||| |||| ||||||    
T  24129311 ttatagggattgtaatttgcttctctcaaggaaattaattgggcttaatcaaggttccaaagtgaaagtgaataatctcattccacct-caaacggtctt 24129409  T
Q  203 gggg 206  Q
    ||||    
T  24129410 gggg 24129413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 24660556 - 24660651
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||| ||  |||| |||| || || | | |||||| || ||| ||||||||||||||||| ||||||||| |||||||||||||    
T  24660556 ggattgtaagttggttctttataggagattggtttggcttaatcaaggctccaaagtgaagtgaataatctcactccacctcc-aaaggtcttgggg 24660651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 20057546 - 20057502
Alignment:
Q  79 tctttgagtcataggttgctagagtgttataaggattgtaagttg 123  Q
    |||||||||| ||| ||||||||||| |||| |||||||||||||    
T  20057546 tctttgagtcttagattgctagagtgctatatggattgtaagttg 20057502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 22442065 - 22442037
Alignment:
Q  167 gaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||||||||    
T  22442065 gaagtgaataatctcattccacctccaaa 22442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 23274349 - 23274289
Alignment:
Q  242 tcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    |||||||| |||||||| ||| | |||||||||| |||| |||||||  ||||||||||||    
T  23274349 tcaaggggatctaattgccggacggagcatcgaagagtttgagtgaagaacttcaagggtt 23274289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 22684299 - 22684136
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| |||||  |||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  22684299 tttcttagaatcactttgttctttgagtcatagattggtagagtgctataaggattgtaagttggttcattctaggaaattgattgggtaaatcaaggtt 22684200  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||| |||||| ||||||||||    
T  22684199 ctaaagtgaagtgaataatctcatttcacctcc-aaaggtctagggggttctttttaaagttctt 22684136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 29842242 - 29842083
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg--ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggta-agtcaag 156  Q
    ||||||| ||| |||||  |||||||||||||||  ||||||| ||| ||||  ||| ||||||||||||  ||||||||||| |||| ||  | |||||    
T  29842242 tttcttagaatcactttgttctttgagtcataggatttgctagggtgctatagtgatggtaagttggttctctcaaggaaatttattgagtttaatcaag 29842143  T
Q  157 gttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaa 217  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||||||    
T  29842142 gttctaaagtgaagtgaataatcacattccacat-caaaaggtcttgggggttctttctaa 29842083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 25907099 - 25906998
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttg 203  Q
    ||||| ||| |||||||||||||  || ||||||||||||||| | | ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  25907099 ttatagggaatgtaagttggttctctcgaggaaattgattgggcttaatcaaggttcaaaagtgaagtgaataatctcattccacctcc-aaaggtcttg 25907001  T
Q  204 ggg 206  Q
    |||    
T  25907000 ggg 25906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 26023217 - 26023316
Alignment:
Q  118 aagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttcta 216  Q
    |||||||||| ||||||||||||| ||||| | | ||||| || |||| |||||||||||| |||||||||||||| ||| ||||||||| |||||||||    
T  26023217 aagttggttctttcaaggaaattggttgggcttaatcaagattttaaagtgaagtgaataagctcattccacctcc-aaatgtcttgggggttctttcta 26023315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 23663270 - 23663185
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||| |||| ||||||| |||||||| ||||||| || | | |||||| || ||| |||||||||||||||||||||||| |||||    
T  23663270 ggatcgtaaattggttctttcaaggagattgattaggcttaatcaaggctccaaagtgaagtgaataatctcattccaccaccaaa 23663185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 24373604 - 24373689
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||   ||||| | |||||||||| | | |||||| | |||| ||||||||||||||||||||||| ||||||    
T  24373604 ggattgtaagttggttttctcaagaagattgattgggcttaatcaaggctttaaagtgaagtgaataatctcattccacatccaaa 24373689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 39666929 - 39666968
Alignment:
Q  166 tgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  39666929 tgaagtgaataatctcattccacctcc-aaaggtcttgggg 39666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 17980154 - 17980293
Alignment:
Q  81 tttgagtcataggttgctagagtgttataaggattgtaagttggtt-cattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatc 179  Q
    |||||||| ||| |||||||||||  ||| ||||||||||||| || | ||||| || |||||||| |  | |||||| |||||| | || ||| ||||     
T  17980154 tttgagtcgtagattgctagagtgcaata-ggattgtaagttgatttctttcaatgatattgattgag--attcaaggatctaaagttaattgagtaatt 17980250  T
Q  180 tcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||||||||||| || ||| |||||| |||||||||||||||||    
T  17980251 tcattccacctcc-aatggtattgggg-ttctttctaaagttctt 17980293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 27488217 - 27488282
Alignment:
Q  83 tgagtcataggttgctagagtgttataaggattgtaagttgg-ttcattcaaggaaattgattggg 147  Q
    |||||||||  ||||||||||| |||| ||||||||| |||| ||| ||||||||| |||||||||    
T  27488217 tgagtcataaattgctagagtgctatagggattgtaaattggtttctttcaaggaacttgattggg 27488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 302
Target Start/End: Original strand, 392 - 574
Alignment:
Q  106 tataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggg 205  Q
    |||| |||||||||||||||||||||||||||||| |||||||   ||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |    
T  392 tatagggattgtaagttggttcattcaaggaaatttattgggtggatcaaggttctaaagtgaagtgaataatctcatttcacctcc-aaaggtcttgag 490  T
Q  206 gcttctttctaaagttcttttttacagttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    | ||||||||||             ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||  ||||||||||||    
T  491 ggttctttctaa-------------agttcttgtgttcaaggggatctaattgtcggacagagcatcgaagagttcgactgaagaacttcaagggtt 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 16648196 - 16648033
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||||||| |||||| |||||||||||||  |||||| |||| |||| |||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  16648196 tttcttataatcactttcttctttgagtcatatattgctaaagtgctatagggattgtaagttggttgattcaaggaaattgattgtgtaaatgaaggtt 16648097  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    | ||  ||||||||||| | ||||||||||||| ||||||||||||| |||||||| ||||||||    
T  16648096 ccaatgtgaagtgaatagtttcattccacctcc-aaaggtcttgggggttctttcttaagttctt 16648033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 17125632 - 17125551
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctc 191  Q
    ||||||||||||||||| ||||||||||||| ||||| | | |||||| || ||| |||||| |||||||||||||||||||    
T  17125632 ggattgtaagttggttctttcaaggaaattggttgggcataatcaaggatccaaagtgaagtaaataatctcattccacctc 17125551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 19303544 - 19303632
Alignment:
Q  108 taaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||| ||| |||||||| |||  ||||| | | |||||| || ||| |||||||||||||||||||||| |||||||    
T  19303544 taaggattgtaagttgattctttcaaggagattagttgggcttaatcaaggctccaaagtgaagtgaataatctcattccagctccaaa 19303632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 18426550 - 18426464
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattg--ggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||| |||||||  ||||||||||||| |||  ||| | ||||||||| ||| ||||||||||||| ||||||||||| ||||    
T  18426550 ggattgtacgttggttttttcaaggaaattggttgtgggttaatcaaggttccaaagtgaagtgaataatgtcattccaccttcaaa 18426464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 14992664 - 14992580
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| | | ||| |||||||||||||||||||||||||||||    
T  14992664 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggct-tcaaaggaagtgaataatctcattccacctccaaa 14992580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 17816116 - 17816185
Alignment:
Q  78 atctttgagtcataggttgctagagtgt--tataaggattgtaagttgg-ttcattcaaggaaattgatt 144  Q
    ||||||||||||||| ||||||||||||  |||| |||||| |  |||| ||||||||||||||||||||    
T  17816116 atctttgagtcatagattgctagagtgtgctatagggattggatattggtttcattcaaggaaattgatt 17816185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 24460603 - 24460546
Alignment:
Q  231 agttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaa 288  Q
    |||||||||||||||||||||| |||||| ||   |||||||||| |||| |||||||    
T  24460603 agttcttgtgttcaagggggtccaattgttggaaggagcatcgaagagtttgagtgaa 24460546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 39856 - 39694
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| ||||| ||||||||||||||| || | |||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39856 tttcttagaatcactttgatctttgagtcatagatttcaagagtgctatatggagtgtaagttggttcattcaaggaaattgattgggtaa-tcaaggtt 39758  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||| ||||||||||||| ||||||||||| | || ||| ||| || ||||||| |||||||||    
T  39757 ctaaagtgaagtgaataatatcattccaccttc-aagggtattgtgggttctttccaaagttctt 39694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 35544 - 35379
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg-ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggt 158  Q
    |||||||||||  ||||  ||||||||||||| | ||||||| ||| |||| |||||||||||||||||| ||| ||||||||||| ||||  |||||||    
T  35544 tttcttataatcgctttgttctttgagtcataagattgctagggtgctatatggattgtaagttggttcactcagggaaattgatttggtatatcaaggt 35445  T
Q  159 tctaaaatgaagtgaataatctcattccacctccaaaaggtctt-ggggcttctttctaaagttctt 224  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||    
T  35444 tctaaattgaagtgaataatctcattccacctcc-aaaggtcttggggggtcctttctaaagttctt 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 35385 - 35314
Alignment:
Q  231 agttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    ||||||||||||||||||| ||||| | |||| | ||| |||||| ||||||||||||  || |||||||||    
T  35385 agttcttgtgttcaaggggatctaaatttcggacggagtatcgaagagttcgagtgaagaacatcaagggtt 35314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 302
Target Start/End: Complemental strand, 14889767 - 14889573
Alignment:
Q  94 ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctcca 193  Q
    ||||||||||| |||| |||||||||||||||||||||||  || || ||||||| | | ||||||||||| |||||||||||||||||||||||||||     
T  14889767 ttgctagagtgctatagggattgtaagttggttcattcaattaattttattgggttaataaaggttctaaagtgaagtgaataatctcattccacctcc- 14889669  T
Q  194 aaaggtcttggggcttctttctaaagttcttttttacagttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattact 293  Q
    |||||||||| || ||||||||||             |||| |||||||||||||| |||||||| ||| |||||||||||| ||||||||||||  |||    
T  14889668 aaaggtcttgtgggttctttctaa-------------agtttttgtgttcaaggggatctaattgccggacagagcatcgaagagttcgagtgaaaaact 14889582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 24698210 - 24698074
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggt 158  Q
    ||||||| ||| |||||  |||||||||||||| ||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||| | | |||||||    
T  24698210 tttcttagaatcactttggtctttgagtcatagattggtagggtgctatagggattgtaagttggttctttcaaggaaattgattgggtttaatcaaggt 24698111  T
Q  159 tctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||| |||| |||||||||||||||||||||||||    
T  24698110 tctaaagtgaaatgaataatctcattccacctccaaa 24698074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 24507586 - 24507691
Alignment:
Q  112 gattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttc 210  Q
    |||||||||||||||| |||||| |||||||||||| | | ||||||||||||| ||| ||||||||||||||||||||||| |||||||||| || |||    
T  24507586 gattgtaagttggttctttcaagaaaattgattgggcttaatcaaggttctaaagtgaggtgaataatctcattccacctcc-aaaggtcttgagggttc 24507684  T
Q  211 tttctaa 217  Q
    |||||||    
T  24507685 tttctaa 24507691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 1343854 - 1343748
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||||||||||||||| ||||||||||||| ||||| | | |||||||| |||| ||||||||||||||||||||||||||| ||||||||||  | ||    
T  1343854 ggattgtaagttggttctttcaaggaaattggttgggcttaatcaaggttttaaagtgaagtgaataatctcattccacctcc-aaaggtcttgaaggtt 1343756  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  1343755 ctttctaa 1343748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 25921801 - 25921906
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    ||||| ||||| ||||| ||||||||||||||||||| | | ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||    
T  25921801 ggattataagtgggttctttcaaggaaattgattgggcttaatcaaggttctaaagtgaagtgaat-atctcattccacctcc-aaaggtcttggggatt 25921898  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  25921899 ctttctaa 25921906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 13607531 - 13607436
Alignment:
Q  109 aaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgg 204  Q
    ||||||| |||||||||||  |||||||||||| ||||  | | ||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  13607531 aaggattttaagttggttctctcaaggaaattggttggccttaatcaaggttctaaagtgaagtgaataatctcattccacctcc-aaaggtcttgg 13607436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 8942665 - 8942755
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||| |||||||||||||||||  ||||| |||||||||||| | | ||||||| | ||| ||||||||||||||||||||||||||||||    
T  8942665 ttatagggattgtaagttggttctctcaagaaaattgattgggcttaatcaaggtcc-aaagtgaagtgaataatctcattccacctccaaa 8942755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 13885565 - 13885653
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||  |  | ||||||| ||| |||||||||||| |||||||||||||||||    
T  13885565 ttatagggattgtaagttggttctttcaagggaattggttgg--acttgaaggttccaaagtgaagtgaataacctcattccacctccaaa 13885653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 20245908 - 20245999
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||| |||||||||||||||||  ||||| |||||| ||||| | |  |||||||| ||| |||| |||||||||||||||||||||||||    
T  20245908 ttatagggattgtaagttggttctctcaagtaaattggttgggcttaaccaaggttccaaagtgaattgaataatctcattccacctccaaa 20245999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 42369326 - 42369263
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttg 123  Q
    ||||||| ||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42369326 tttcttagaatcactttgatctttgagtcatagattgctagggtgctataaggattgtaagttg 42369263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 4831500 - 4831388
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttg 203  Q
    ||||| |||||||||| ||||||  |||||||||||| ||||  | | ||||||||| ||| |||| |||||||||| |||||||||||||| ||| ||     
T  4831500 ttatatggattgtaagatggttctctcaaggaaattggttggtcttaatcaaggttccaaagtgaaatgaataatcttattccacctccaaagggt-tta 4831402  T
Q  204 gggcttctttctaa 217  Q
    ||| ||||||||||    
T  4831401 ggggttctttctaa 4831388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 19614023 - 19614107
Alignment:
Q  112 gattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||  | |||||| || |||||| | | ||||||||  ||| ||||||||||||||||||||||||||||||    
T  19614023 gattgtaagttggttctctaaaggaattttattgggcttaatcaaggtttcaaagtgaagtgaataatctcattccacctccaaa 19614107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 16973907 - 16974035
Alignment:
Q  58 catttcttataattactttcatctttgagtcatagg--ttgctagagtgtta-taaggattgtaagttggttcattcaaggaaattgattgggta-agtc 153  Q
    ||||||||| ||| |||||  || |||||||||| |  ||||||| ||| || || ||||||||||||| ||| |||||| ||||||| | |||  | ||    
T  16973907 catttcttagaatcactttgttcattgagtcataagatttgctagggtgctaatagggattgtaagttgcttctttcaagaaaattgactaggtttaatc 16974006  T
Q  154 aaggttctaaaatgaagtgaataatctca 182  Q
    ||||||||||| |||||||||||||||||    
T  16974007 aaggttctaaattgaagtgaataatctca 16974035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 13904962 - 13904991
Alignment:
Q  166 tgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||||||||||||||||    
T  13904962 tgaagtgaataatctcattccacctccaaa 13904991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 13904993 - 13905022
Alignment:
Q  166 tgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||||||||||||||||    
T  13904993 tgaagtgaataatctcattccacctccaaa 13905022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 23295731 - 23295816
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||| |  ||||| | |||||||||| | | |||||| |  ||| |||| |||||||||||||||||||||||||    
T  23295731 ggattgtaagttggtcctctcaagaagattgattgggcttaatcaaggcttcaaagtgaattgaataatctcattccacctccaaa 23295816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 20324122 - 20323989
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| ||||| ||||||||||||||| || |||||||| |||| |||||||||||| ||||  ||||||||||| ||||| ||| ||||||||    
T  20324122 tttcttagaatcactttgatctttgagtcatagatttctagagtgctatagggattgtaagttagttctctcaaggaaatttattggataa-tcaaggtt 20324024  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaa 194  Q
    ||||| |||||||||||||| ||||||||||||||    
T  20324023 ctaaattgaagtgaataatcgcattccacctccaa 20323989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 11554656 - 11554518
Alignment:
Q  79 tctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataa 177  Q
    |||||||||| ||| ||| |||  || |||| ||||| ||||||||||| ||||||||||||||||||| | | ||||||||||||| ||||||||||||    
T  11554656 tctttgagtcttagattgttaggttgctatagggattataagttggttctttcaaggaaattgattgggcttaatcaaggttctaaattgaagtgaataa 11554557  T
Q  178 tctcattccacctccaaaaggtcttggggcttctttctaa 217  Q
    |||||||||| |||||||| ||||||||| ||||||||||    
T  11554556 tctcattccaactccaaaa-gtcttgggggttctttctaa 11554518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 13524323 - 13524229
Alignment:
Q  129 ttcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||  |||||| ||||||||||    
T  13524323 ttcaaggaaatcgattgcgttaatcaaggttctaaagtgaagtgaataatctcattccacctcc-aaatgtcttgggtgttctttataaagttctt 13524229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 16836186 - 16836091
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||| | ||| | |||||| |||| |||||| |||||| |||||||||||||    
T  16836186 ggattgtaagttggttcattcaaggaaattgattgggcttaatcaaggtcccaaagttaagtgattaatatcattcaacctcc-aaaggtcttgggg 16836091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 7310848 - 7310768
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacct 190  Q
    ||||||||||||||||| ||| ||||||||  ||||| | | ||||| ||| ||| |||||||||||||||||||||||||    
T  7310848 ggattgtaagttggttctttccaggaaattagttgggcttaatcaagattccaaagtgaagtgaataatctcattccacct 7310768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 10492213 - 10492311
Alignment:
Q  108 taaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||| ||||  ||||| | |||||||||  | | |||||| |  ||| ||||||||||||| ||||||||||||| |||||||||||||    
T  10492213 taaggattgtaagtttgttctctcaagaagattgattggacttaatcaaggcttcaaagtgaagtgaataatatcattccacctcc-aaaggtcttgggg 10492311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 16656380 - 16656446
Alignment:
Q  81 tttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattggg 147  Q
    |||||||||||  |||||| |||| |||||||||||||||||  | |||| ||||| ||||||||||    
T  16656380 tttgagtcatacattgctatagtgctataaggattgtaagttattgcattaaaggatattgattggg 16656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 27792 - 27680
Alignment:
Q  78 atctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataa 177  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||| |||||||||||| || || ||||||||||||| |||| ||||||     
T  27792 atctttgagtcatagattgctagagtgctataaggattgtatgttgattcattccaggaaattgatt-ggaaaatcaaggttctaaagtgaaatgaatag 27694  T
Q  178 tctcattccacctc 191  Q
    ||||||||||||||    
T  27693 tctcattccacctc 27680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 10375828 - 10375990
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg-ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggt 158  Q
    ||||||| ||| |||||  |||||||||| || | ||||||||||| |||| ||||||||||||||||| |||||||  ||||||||||||| |||| ||    
T  10375828 tttcttagaatcactttgttctttgagtcttaagattgctagagtgctatagggattgtaagttggttctttcaaggggattgattgggtaaatcaaagt 10375927  T
Q  159 tctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
     || || ||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||    
T  10375928 cct-aagtgaagtgaataatctcattccacct-ctaaaggtcttgggggttctttc-aaagttctt 10375990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 10939418 - 10939558
Alignment:
Q  79 tctttgagtcatagg--ttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaat 175  Q
    ||||||||||||| |  ||||||  ||| |||| ||||||||||||||||| |||||||||||||||| || | | | ||||||||||| ||||||||||    
T  10939418 tctttgagtcataagatttgctaaggtgctatagggattgtaagttggttctttcaaggaaattgatttggcataattaaggttctaaagtgaagtgaat 10939517  T
Q  176 aatctcattccacctccaaaaggtcttggggcttctttctaa 217  Q
    ||||||||||||||| | ||||||||||||| ||||||||||    
T  10939518 aatctcattccacct-cgaaaggtcttgggggttctttctaa 10939558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 30239092 - 30238930
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg--ttgctagagtgtta-taaggattgtaagttggttcattcaaggaaattgattgggta---agtc 153  Q
    ||||||||||| |||||  ||||||||||||| |  ||||||| ||| || || |||||||| |||||||| ||||||||||||||||| ||    | ||    
T  30239092 tttcttataatcactttgttctttgagtcatatgatttgctagggtgctaatagggattgtatgttggttctttcaaggaaattgattgtgtgcttaatc 30238993  T
Q  154 aaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaa 217  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  30238992 aaggttctaaagtgaagtgaataatctcattctacctcc-aaaggtcttgggggttctttctaa 30238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 16223475 - 16223384
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| | | ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  16223475 ttatagggattgtaagttggttctttcaaggaaattgattgggcttaatcaaggttccaaagtgaagtgaataatctcatttcacctccaaa 16223384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 9653298 - 9653204
Alignment:
Q  129 ttcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    ||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||  |||||| ||||||||||    
T  9653298 ttcaaggaaatcgattgcgttaatcaaggttctaaagtgaagtgaataatctcattccacctcc-aaatgtcttgggtgttctttataaagttctt 9653204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 1376237 - 1376322
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||| |||| |||||| |||||||||||| | | |||||||| |||| ||||||||||||||||||||||||||||||    
T  1376237 ggattgtaagtttgttctttcaagaaaattgattgggcttaatcaaggttttaaagtgaagtgaataatctcattccacctccaaa 1376322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 5224047 - 5223965
Alignment:
Q  114 ttgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||| ||||||||||||| ||  | | | ||||||||| ||| ||||||||||||||||||||||||||||||    
T  5224047 ttgtaagttggttctttcaaggaaattggtttagcttaatcaaggttccaaagtgaagtgaataatctcattccacctccaaa 5223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 19335824 - 19335682
Alignment:
Q  80 ctttgagtcataggttgctagagtgttataaggattgtaagttggtt-cattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataat 178  Q
    ||||||||||||| || |||||||  |||| ||||||||||||| || | |||||||| ||||||||||  | |||||| | |||| |||| ||| || |    
T  19335824 ctttgagtcatagatttctagagtactatatggattgtaagttgattgcgttcaaggatattgattggg--aatcaaggatgtaaagtgaattgagtagt 19335727  T
Q  179 ctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
     ||||||||||||||| | || |||||| |||||||||||||||||    
T  19335726 ttcattccacctccaaca-gtattgggggttctttctaaagttctt 19335682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 11353139 - 11353054
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||  |||||| || |||||||||||||||| | | ||||||||||||| |||||||||| ||||||||||||| |||||    
T  11353139 ggattgtaaaatggttctttaaaggaaattgattgggcttaatcaaggttctaaagtgaagtgaatgatctcattccaccaccaaa 11353054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 30253485 - 30253354
Alignment:
Q  60 tttcttataattactttcatctttgagtcatagg--ttgctagagtgtta-taaggattgtaagttggttcattcaaggaaattgattg---ggtaagtc 153  Q
    ||||||||||| |||||  ||||| ||||||| |  ||||||| ||| || || |||||||| |||||||| |||||||||||||||||   | | | ||    
T  30253485 tttcttataatcactttgttctttaagtcatatgatttgctagggtgctaatagggattgtatgttggttctttcaaggaaattgattgtgtgcttaatc 30253386  T
Q  154 aaggttctaaaatgaagtgaataatctcattc 185  Q
    |||| |||||| ||||||||||||||||||||    
T  30253385 aaggctctaaagtgaagtgaataatctcattc 30253354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 43923887 - 43923848
Alignment:
Q  30 tgttgagtatggcacgtgaattggaaaccatttcttataa 69  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  43923887 tgttgaatatggcacgtgaattggaaaccatttcttataa 43923848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 19018547 - 19018658
Alignment:
Q  82 ttgagtcataggttgctagagtgttataaggattgtaagttggtt-cattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaataatct 180  Q
    ||||||||||| ||||||||||| ||||  ||||||||| || || | |||||||| ||||||||||  | |||| | |||||| |||| ||| |||| |    
T  19018547 ttgagtcatagattgctagagtgctatagagattgtaagatgattgctttcaaggatattgattggg--aatcaaagatctaaagtgaattgagtaattt 19018644  T
Q  181 cattccacctccaa 194  Q
    ||||||||||||||    
T  19018645 cattccacctccaa 19018658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 11347419 - 11347335
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| | | ||| |||||||||||||||||||||||||||||    
T  11347419 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggct-tcaaaggaagtgaataatctcattccacctccaaa 11347335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 16775978 - 16775893
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||| | | |||||| |||||| || || | | ||||| ||| ||| ||||||||||||||||||||||||||||||    
T  16775978 ggattgtaagttgttcctttcaagaaaattggttaggcttaatcaagtttccaaagtgaagtgaataatctcattccacctccaaa 16775893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 10878155 - 10878090
Alignment:
Q  152 tcaaggttctaaaatgaagtgaataatctca-ttccacctccaaaaggtcttggggcttctttctaa 217  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||| ||||||||||||  ||||||||||    
T  10878155 tcaaggttccaaagtgaagtgaataatctcatttccacatcc-aaaggtcttgggtgttctttctaa 10878090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 10203780 - 10203712
Alignment:
Q  152 tcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagtt 221  Q
    |||||| |||||| |||| ||| |||| ||||||||||||| || ||| |||||| ||||||||||||||    
T  10203780 tcaaggatctaaagtgaattgagtaatttcattccacctcc-aagggtattgggggttctttctaaagtt 10203712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 10203708 - 10203644
Alignment:
Q  238 gtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    |||||||||||| || ||||||||| | ||||||| || ||||||||||||   |||||||||||    
T  10203708 gtgttcaaggggatccaattgtcggacggagcatcaaagagttcgagtgaagagcttcaagggtt 10203644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 11580029 - 11580001
Alignment:
Q  167 gaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||||||||    
T  11580029 gaagtgaataatctcattccacctccaaa 11580001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 14971516 - 14971480
Alignment:
Q  152 tcaaggttctaaaatgaagtgaataatctcattccac 188  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  14971516 tcaaggttccaaagtgaagtgaataatctcattccac 14971480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 15400992 - 15400956
Alignment:
Q  152 tcaaggttctaaaatgaagtgaataatctcattccac 188  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  15400992 tcaaggttccaaagtgaagtgaataatctcattccac 15400956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 19329067 - 19329035
Alignment:
Q  163 aaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||| |||||||||||||||||||||    
T  19329067 aaatgaagtgagtaatctcattccacctccaaa 19329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 16598405 - 16598538
Alignment:
Q  60 tttcttataattactttcatctttgagtcataggttgctagagtgttataaggattgtaagttggttcattcaaggaaattgattgggtaagtcaaggtt 159  Q
    ||||||| ||| || || ||||||||||||||  |||||| |||  ||||  ||||| ||||||||||||||||| |||||||||| |||| ||||| ||    
T  16598405 tttcttagaatcacgttgatctttgagtcatatattgctaaagttctatagagattgcaagttggttcattcaagaaaattgattgagtaa-tcaagatt 16598503  T
Q  160 ctaaaatgaagtgaataatctcattccacctccaa 194  Q
    ||||| |||||||||||||||||||||||||||||    
T  16598504 ctaaagtgaagtgaataatctcattccacctccaa 16598538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 18564962 - 18565046
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||  ||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||| |||||||    
T  18564962 ggattgtaagttggttt-ttcaaggaaattgattgggcttaatcaaggttctaaagtgaagtgaataatctcattccaactccaaa 18565046  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 25927768 - 25927883
Alignment:
Q  78 atctttgagtcataggttgctagagtgttataaggattgtaagttggtt-cattcaaggaaattgattgggtaagtcaaggttctaaaatgaagtgaata 176  Q
    ||||||||||||||| ||||||||||| |||| ||||||||| ||| || | |||||||| |||||||| |||  |||||| |||||| |||| ||| ||    
T  25927768 atctttgagtcatagattgctagagtgatatagggattgtaaattgattgctttcaaggatattgattgagta--tcaaggatctaaagtgaattgagta 25927865  T
Q  177 atctcattccacctccaa 194  Q
    || |||||||||||||||    
T  25927866 atttcattccacctccaa 25927883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 17583313 - 17583232
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctc 191  Q
    |||||||||||| |||| ||||||||||||| ||||| | | ||||||||| ||| ||||||||||||||||||||||||||    
T  17583313 ggattgtaagttagttctttcaaggaaattggttgggcttaatcaaggttccaaagtgaagtgaataatctcattccacctc 17583232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 12475550 - 12475654
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||  |    
T  12475550 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggcttcaaagtgaagtgaataatctcattccacctcc-aaaggtcttggggggt 12475648  T
Q  210 ctttct 215  Q
    ||||||    
T  12475649 ctttct 12475654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 16373696 - 16373789
Alignment:
Q  113 attgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||| |||||||| |||||||||| | | |||||| ||  || |||||||||||| ||||||||||||||  ||||||||||||    
T  16373696 attgtaagttggttctttcaaggagattgattgggcttaatcaaggctccgaagtgaagtgaataagctcattccacctcc-gaaggtcttgggg 16373789  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 10746910 - 10747005
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    ||||||||||||||||| || ||||| |||| ||||| | | |||||| || | | | ||||||||||||||||||||||||| |||||||||||||    
T  10746910 ggattgtaagttggttctttaaaggagattggttgggcttaatcaaggctccagagttaagtgaataatctcattccacctcc-aaaggtcttgggg 10747005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 24001203 - 24001296
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttgg 204  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| |  ||| |||||||||||||||||||| |||||| |||||||||||    
T  24001203 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggcttcaaagtgaagtgaataatctcattcaacctcc-aaaggtcttgg 24001296  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 18561630 - 18561563
Alignment:
Q  81 tttgagtcataggttgctagagtgttataaggattgtaagttgg-ttcattcaaggaaattgattggg 147  Q
    |||||||||||| |||||||||||||||| | ||||||  |||| ||||||||||||| ||| |||||    
T  18561630 tttgagtcatagattgctagagtgttatatgaattgtatattggtttcattcaaggaatttggttggg 18561563  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 20403042 - 20403123
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctc 191  Q
    ||||| |||||||||||  |||||||| ||| ||||| | | | ||||||| ||| |||||||||||||| |||||||||||    
T  20403042 ggattttaagttggttctctcaaggaatttggttgggcttaattaaggttccaaagtgaagtgaataatcccattccacctc 20403123  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 15935233 - 15935261
Alignment:
Q  167 gaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||||||||    
T  15935233 gaagtgaataatctcattccacctccaaa 15935261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 16598563 - 16598631
Alignment:
Q  233 ttcttgtgttcaagggggtctaattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggt 301  Q
    ||||||||||||| ||  |||||||||||    |||||||||||||||||||||||  | |||||||||    
T  16598563 ttcttgtgttcaaaggtatctaattgtcgaatggagcatcgaaaagttcgagtgaagaagttcaagggt 16598631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 19959109 - 19959081
Alignment:
Q  167 gaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||||||||    
T  19959109 gaagtgaataatctcattccacctccaaa 19959081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 6195 - 6330
Alignment:
Q  153 caaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttcttttttacagttcttgtgttcaagggggtc 252  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||             |||||||||||||||||||  |    
T  6195 caaggttctaaagtgaagtgaataatctcatttcacctcc-aaaggtcttgggggttctttctaa-------------agttcttgtgttcaaggggagc 6280  T
Q  253 taattgtcggccagagcatcgaaaagttcgagtgaattacttcaagggtt 302  Q
    |||||||||| | |||||||||| ||||||||||||  ||||||||||||    
T  6281 taattgtcggacggagcatcgaagagttcgagtgaagaacttcaagggtt 6330  T

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Target: scaffold0018 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 63362 - 63447
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||||||| ||||||||||||||||||| | | ||||||||| ||| ||||||||||||||||||||||||||||||    
T  63362 ggattgtaagttggttctttcaaggaaattgattgggcttaatcaaggttccaaagtgaagtgaataatctcattccacctccaaa 63447  T

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Target: scaffold0711 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 3987 - 4093
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggctt 209  Q
    |||||| |||||| ||| ||||||||||||| ||  | | | ||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  3987 ggattgaaagttgattctttcaaggaaattggttacgcttaatcaaggttccaaattgaagtgaataatctcattccacctcc-aaagatcttggggctt 4085  T
Q  210 ctttctaa 217  Q
    ||||||||    
T  4086 ctttctaa 4093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 947 - 856
Alignment:
Q  105 ttataaggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||||||||  |||||||||||| ||||| | | | ||||||| ||| ||||| ||||||||||||||||||||||||    
T  947 ttataaggattgtaagttggttctctcaaggaaattggttgggcttaattaaggttccaaagtgaagagaataatctcattccacctccaaa 856  T

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Target: scaffold0032 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 70418 - 70489
Alignment:
Q  152 tcaaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaaagttctt 224  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||    
T  70418 tcaatgttctaaagtgaagtgaataatctcattccacctcc-aaaggtcgtgggggttctttctgaagttctt 70489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1121 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 1214 - 1295
Alignment:
Q  115 tgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    ||||||||||||| |||||||||||| |||||||  | || |||||| ||| |||||||||||||| |||||||||||||||    
T  1214 tgtaagttggttctttcaaggaaatttattgggtttaatcgaggttccaaagtgaagtgaataatcccattccacctccaaa 1295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 42502 - 42441
Alignment:
Q  154 aaggttctaaaatgaagtgaataatctcattccacctccaaaaggtcttggggcttctttctaa 217  Q
    ||||||||||| |||||||||||||||||||||||||||  |||| ||||||| ||||||||||    
T  42502 aaggttctaaagtgaagtgaataatctcattccacctcc--aagggcttgggggttctttctaa 42441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 20735 - 20651
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| | | ||| |||||||||||||||||||||||||||||    
T  20735 ggattgtaagttggttctctcaagaagattgattgggattaatcaaggct-tcaaaggaagtgaataatctcattccacctccaaa 20651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 13545 - 13630
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattgggta-agtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||  ||||| | | |||||||| | | |||||| |  ||| ||||||||||||||||||||||||||||||    
T  13545 ggattgtaagttggttctctcaagaagactgattgggcataatcaaggcttcaaagtgaagtgaataatctcattccacctccaaa 13630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 6535 - 6619
Alignment:
Q  111 ggattgtaagttggttcattcaaggaaattgattggg-taagtcaaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||||||||||||||||  ||||| | |||||||||| | | |||||| |  ||||| ||||||||||||||||||||||||||||    
T  6535 ggattgtaagttggttctctcaagaagattgattgggcttaatcaaggcttcaaaat-aagtgaataatctcattccacctccaaa 6619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 98187 - 98146
Alignment:
Q  154 aaggttctaaaatgaagtgaataatctcattccacctccaaa 195  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  98187 aaggctctaaagtgaagtgaataatctcattccacctccaaa 98146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 97204 - 97161
Alignment:
Q  163 aaatgaagtgaataatctcattccacctccaaaaggtcttgggg 206  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||    
T  97204 aaatgaagggaataatctcattccacttccaaaaggacttgggg 97161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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