View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0408_low_1 (Length: 752)
Name: NF0408_low_1
Description: NF0408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0408_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 89 - 739
Target Start/End: Original strand, 26084357 - 26085007
Alignment:
| Q |
89 |
gatgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaagg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084357 |
gatgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaagg |
26084456 |
T |
|
| Q |
189 |
aatggttggtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcg |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084457 |
aatggttggtctgatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcg |
26084556 |
T |
|
| Q |
289 |
ttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26084557 |
ttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatacaatgt |
26084656 |
T |
|
| Q |
389 |
cgatgtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaac |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084657 |
cgatgtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaac |
26084756 |
T |
|
| Q |
489 |
agtatcaatatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataatta |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26084757 |
agtatcaatatcattatccgggtctctttggtaaaatgggactttattagattcacaaaattttgcaatctcatcgtctaaggcaacaactagataatta |
26084856 |
T |
|
| Q |
589 |
ggtataccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattt |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
26084857 |
ggtataccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattt |
26084956 |
T |
|
| Q |
689 |
tctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacag |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084957 |
tctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacag |
26085007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 93 - 738
Target Start/End: Original strand, 26119923 - 26120568
Alignment:
| Q |
93 |
tgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26119923 |
tgatggatgaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcaaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatg |
26120022 |
T |
|
| Q |
193 |
gttggtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcgttgt |
292 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
26120023 |
gttggtctgatatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccatcccagggtcgttgaagacatcgttgt |
26120122 |
T |
|
| Q |
293 |
agccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgtcgat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
26120123 |
agccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatatcgat |
26120222 |
T |
|
| Q |
393 |
gtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagta |
492 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || | |||||||||| | |||||||||||||||||||||||| |
|
|
| T |
26120223 |
gtctgatagaagaacactgtatcccaactgcaaaaattctcttagaatacggaatttgagactggagacagcctcgccgtttggaatttttccaacagta |
26120322 |
T |
|
| Q |
493 |
tcaatatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggta |
592 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26120323 |
tcaataccattatccgggtctcttttgtaaaatgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggta |
26120422 |
T |
|
| Q |
593 |
taccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctc |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
26120423 |
taccaactctcttgatattggtgaaccagatctcgaggatctctttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattttctc |
26120522 |
T |
|
| Q |
693 |
taataaatttgccaatctcgggttcaagaattcatcaggagcaaca |
738 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
26120523 |
taataaatttgccaatctcgggttcacggattcatcaggagcaaca |
26120568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 97 - 738
Target Start/End: Original strand, 26096640 - 26097281
Alignment:
| Q |
97 |
ggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttg |
196 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096640 |
ggataaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttg |
26096739 |
T |
|
| Q |
197 |
gtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcgttgtagcc |
296 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||| |||| | ||||||||||||||| || |
|
|
| T |
26096740 |
gtctgatatagaagaaaccacaattgtaaacaaatatcctcctggtataaacaccactagaccaacccatcccagggtcgtcgaagacatcgttgtaacc |
26096839 |
T |
|
| Q |
297 |
ataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgtcgatgtct |
396 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26096840 |
ataagctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtct |
26096939 |
T |
|
| Q |
397 |
gatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaa |
496 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
26096940 |
gaaagaagaacactatatcccaactgcaaaaattctcttagaatatgaaatttgagcgtggagacagccgcgccgttgaccatttttccaacagtatcaa |
26097039 |
T |
|
| Q |
497 |
tatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtatacc |
596 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26097040 |
aaccattgtccgggtctctttggtaaaatgggactttattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggtatacc |
26097139 |
T |
|
| Q |
597 |
aactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaat |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
26097140 |
aactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaactataatctctcgtttaactgcgattttctctaat |
26097239 |
T |
|
| Q |
697 |
aaatttgccaatctcgggttcaagaattcatcaggagcaaca |
738 |
Q |
| |
|
| ||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
26097240 |
atctttgccaatcttgggttcacggattcatcaggagcaaca |
26097281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 97 - 738
Target Start/End: Original strand, 26126584 - 26127225
Alignment:
| Q |
97 |
ggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttg |
196 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26126584 |
ggataaaagagttcctcgttgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttg |
26126683 |
T |
|
| Q |
197 |
gtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcgttgtagcc |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||| || |||| |||| || ||||||||||||| | | || | ||||||||||| |||| |
|
|
| T |
26126684 |
gtctgatatagaagaaaccagaattgtaaacccatatcctagttgtatgaacgatacgagaccaacccatcagaggttcgtcaaagacatcgttaaagcc |
26126783 |
T |
|
| Q |
297 |
ataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgtcgatgtct |
396 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26126784 |
ataagctgtcatgttatcatgaccatcgctcatggactctacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtct |
26126883 |
T |
|
| Q |
397 |
gatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaa |
496 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||||||||||||| |
|
|
| T |
26126884 |
gatagaagaacgctatatcccaactgcaaaaattctcttaaaatacgaaatttaagcccagagacagccgctctccctcctatttttccaacagtatcaa |
26126983 |
T |
|
| Q |
497 |
tatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtatacc |
596 |
Q |
| |
|
|| ||| |||||||||||||| |||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26126984 |
tagcatcatccgggtctcttttgtaaaacgggactttatttgattcacaaaactttgaaatttcatcgtctaaggcaacaactaaataattaggtatacc |
26127083 |
T |
|
| Q |
597 |
aactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaat |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||||||||||||| || || || |||||||||||| |
|
|
| T |
26127084 |
gactctcttgatattggtgaaccagacctcgagggtttccttaacattggagtttgcaagggcaactatgatctctcggtttactgcaattttctctaat |
26127183 |
T |
|
| Q |
697 |
aaatttgccaatctcgggttcaagaattcatcaggagcaaca |
738 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
26127184 |
aaatttgccaatctcgggttcacggattcatcaggagcaaca |
26127225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 89 - 738
Target Start/End: Original strand, 26064632 - 26065281
Alignment:
| Q |
89 |
gatgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaagg |
188 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||| ||||| | ||| |||||||| |||||||||||||||||||| |
|
|
| T |
26064632 |
gatgcgatggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccacacgatccaaaagctcaattgaagg |
26064731 |
T |
|
| Q |
189 |
aatggttggtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcg |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||| || |||| ||| | ||||||||||||| | | || | ||| |||| |
|
|
| T |
26064732 |
aatggttggtctaatatagaagaaaccagaattgtaaacccatatcctagttgtatgaactattcgagaccaacccatcacgggctcatcatagatatcg |
26064831 |
T |
|
| Q |
289 |
ttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
26064832 |
ttgtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatataatat |
26064931 |
T |
|
| Q |
389 |
cgatgtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaac |
488 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
26064932 |
cggtgtctgatagaagaacgctatatcccagctgcaaaaattcccttagaatacgaaatttaagcccggagacagccgttctctttcctctttttccaac |
26065031 |
T |
|
| Q |
489 |
agtatcaatatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataatta |
588 |
Q |
| |
|
|| ||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26065032 |
agcatcaataccattatccgggtctcttttgtaaaatgggacttgattcaattcacaaaactttgcaatctcatcgtctaaggcaacaactagataatta |
26065131 |
T |
|
| Q |
589 |
ggtataccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattt |
688 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| || || || |||| ||||| ||||||||||||| ||||||||||||| ||||||| || |||| |
|
|
| T |
26065132 |
gatataccaactctcttgatattagtgaaccagacttccaggatctccttaacattggagtttgcaagggcaactatgatctcttgtttaactgcgattt |
26065231 |
T |
|
| Q |
689 |
tctctaataaatttgccaatctcgggttcaagaattcatcaggagcaaca |
738 |
Q |
| |
|
| ||||||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
26065232 |
tatctaatatatttgccaatctcgggttcacggattcatcaggagcaaca |
26065281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 91 - 739
Target Start/End: Original strand, 26035986 - 26036634
Alignment:
| Q |
91 |
tgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaa |
190 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
26035986 |
tgtgacggataaaatagttcctcgttgaaaacggcttggtcccatgcaacctccttggaaagccgtgtcgcgacacggtccaaaagctcaattgaaggaa |
26036085 |
T |
|
| Q |
191 |
tggttggtcggatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcgtt |
290 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| | ||| || |||||||||| || | || | |||||||||||| |
|
|
| T |
26036086 |
tggttggtctgatatagaagaaaccggaattgtaaacccatatcctcatggtatgagcgtatcgagcccaacccatcgcaggttcgtcgaagacatcgtt |
26036185 |
T |
|
| Q |
291 |
gtagccataagctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatagacaatgtcg |
390 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
26036186 |
atagccgtaagctgtcatgttattatggccatcactcatggactcgacatctgaatcacggtatagatgatcaaaaggattctgtaaatatacaatgtca |
26036285 |
T |
|
| Q |
391 |
atgtctgatagaagaacactatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagc------cccaccgtttggaatttttc |
484 |
Q |
| |
|
| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||| |
|
|
| T |
26036286 |
acgtctgataagagaacaccatatcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagcatggttccctcc--ttg----ttttc |
26036379 |
T |
|
| Q |
485 |
caacagtatcaatatcattatccgggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagata |
584 |
Q |
| |
|
||| || |||||| ||| ||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
26036380 |
caatggtgtcaataccatcatctgggtctcttttgtaaaatgggacttgatttgtttcacaaaattttgaaatctcatcgtctaaagcaacaactagata |
26036479 |
T |
|
| Q |
585 |
attaggtataccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgct |
684 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||| | ||| |||||||||| || |||||||| | |||||||||||||||||||| | |
|
|
| T |
26036480 |
attagatataccaactctcttgatatttgagaaccagacctctaacatctccttcacattggaatttgcaagtgctactatgatctctcgtttaactgag |
26036579 |
T |
|
| Q |
685 |
attttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacag |
739 |
Q |
| |
|
|||||||| |||| ||||||||||| || |||| | ||||||||||| |||||| |
|
|
| T |
26036580 |
attttctccaatatctttgccaatcttggattcacggattcatcaggaacaacag |
26036634 |
T |
|
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