View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0408_low_2 (Length: 379)
Name: NF0408_low_2
Description: NF0408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0408_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 35369787 - 35370126
Alignment:
| Q |
29 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcac |
128 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |||| |
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| T |
35369787 |
agtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctgtcac |
35369886 |
T |
|
| Q |
129 |
ttgtatgaactctttttctcttcatttttgcatgcttctgtttactttctagacgcnnnnnnnnnnnntattttaaaaagtttatgtttattttaaattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35369887 |
ttgtatgaactctttttctcttcatttttgcatgcttctgtttactttctagacgcaaaaacaaaaaatattttaaaaagtttatgtttattttaaattg |
35369986 |
T |
|
| Q |
229 |
ttaacaaggaaatgaaagattcatgtactcaatatttgtaatatagaaaggtgaaaagcaaaataggaataatgcattttcaagaatttaatgaaacagt |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35369987 |
ttaacaaggaaatgaaagattcatgtactcaatatttgtaatatagaaaggtgaaaagcaaaataggaataatgcattttcaagaatttaatgaaacagt |
35370086 |
T |
|
| Q |
329 |
actttgatccttccaaaaatatttaaaatgctagatctgt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
35370087 |
actttgatccttccaaaaatatttaaaatgctagatctgt |
35370126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 35354642 - 35354777
Alignment:
| Q |
29 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcac |
128 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35354642 |
agtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcac |
35354741 |
T |
|
| Q |
129 |
ttgtatgaactctttttctcttcatttttgcatgctt |
165 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |
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| T |
35354742 |
ttgtatgaactttttttct-ttcatttttgcatgctt |
35354777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 35379146 - 35379281
Alignment:
| Q |
29 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcac |
128 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
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|
| T |
35379146 |
agtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctatcac |
35379245 |
T |
|
| Q |
129 |
ttgtatgaactctttttctcttcatttttgcatgctt |
165 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
35379246 |
ttgtatgaactttttttct-ttcatttttgcatgctt |
35379281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 19630589 - 19630474
Alignment:
| Q |
29 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||| |
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|
| T |
19630589 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcac |
19630490 |
T |
|
| Q |
129 |
ttgtatgaactctttt |
144 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
19630489 |
ttgtatgaactttttt |
19630474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 19684208 - 19684323
Alignment:
| Q |
29 |
agttcttatactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcac |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| |||||||| |
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|
| T |
19684208 |
agttcttatactattggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcac |
19684307 |
T |
|
| Q |
129 |
ttgtatgaactctttt |
144 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
19684308 |
tggtatgaactttttt |
19684323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 14124876 - 14124910
Alignment:
| Q |
218 |
attttaaattgttaacaaggaaatgaaagattcat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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|
| T |
14124876 |
attttaaattgttaacaaggaaatgaaagactcat |
14124910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 2258539 - 2258460
Alignment:
| Q |
37 |
tactattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttac |
116 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || || ||| | |||||||||||||| |||||||| |||||||| |
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|
| T |
2258539 |
tactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2258460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 2280526 - 2280450
Alignment:
| Q |
40 |
tattggctacatagagcacttcatcatcattatctatactctcgttatcattctcatcaccattcttcaattgttac |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| || || ||| | |||||||||||||| |||||||| |||||||| |
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|
| T |
2280526 |
tattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2280450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 14486520 - 14486483
Alignment:
| Q |
218 |
attttaaattgttaacaaggaaatgaaagattcatgta |
255 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
14486520 |
attttaaattgctaacaaggatatgaaagattcatgta |
14486483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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