View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0408_low_5 (Length: 316)
Name: NF0408_low_5
Description: NF0408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0408_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 32 - 306
Target Start/End: Original strand, 46959748 - 46960024
Alignment:
| Q |
32 |
tcgggaatcacagtagtattgatcaattattattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccc |
131 |
Q |
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| T |
46959748 |
tcgggaatcacagtagtattgatcaattattattggattggacacattttccatcacgatatcctgaaatgtgatattggaggcaagaccatgcccaccc |
46959847 |
T |
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| Q |
132 |
taaagaaaatttaacttgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttga |
231 |
Q |
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| T |
46959848 |
taaagaaaatttaacttgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttga |
46959947 |
T |
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| Q |
232 |
ttctcagcccatttttcgtgttcgtaagataagctcc--atatacatttacattttcaatcttctcccatgcctttg |
306 |
Q |
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| T |
46959948 |
ttctcagcccatttttcgtgttcgtaagataagctccatatatacatttacattttcaatcttctcccatgcctttg |
46960024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 299
Target Start/End: Complemental strand, 44522403 - 44522137
Alignment:
| Q |
36 |
gaatcacagtagtattgatcaattattattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaa |
135 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||| ||| |||||||| |||||||||| |||| ||||||||||| |
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| T |
44522403 |
gaatcgcagtagtattgatctattattattggattggacacattttccattaagatattctggaatgtgatcttggaggcaaaaccactcccaccctaaa |
44522304 |
T |
|
| Q |
136 |
gaaaatttaacttgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttac----caacttacctgccatgttttga |
231 |
Q |
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|||||||| || |||||||| | ||| ||| ||| ||||| || |||||||||||||||| || |||||| || |||||||||||||||||| |
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| T |
44522303 |
gaaaatttggctcgactcaatagacttg-tcatcactaggtgaaatagaatgagaatgaaaatgatacggttacgaagaaagttacctgccatgttttga |
44522205 |
T |
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| Q |
232 |
ttctcagcccatttttcgtgttcgtaagataagctccatatacatttacattttcaatcttctcccat |
299 |
Q |
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|||||| |||||| | ||||| |||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
44522204 |
ttctcaccccattatcagtgttgtaaagataagctccatcaacaattacattttgaatcttctcccat |
44522137 |
T |
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