View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0409_low_3 (Length: 584)
Name: NF0409_low_3
Description: NF0409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0409_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 86 - 512
Target Start/End: Original strand, 36563761 - 36564187
Alignment:
| Q |
86 |
aaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatata |
185 |
Q |
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| T |
36563761 |
aaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatata |
36563860 |
T |
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| Q |
186 |
ttaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgca |
285 |
Q |
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| T |
36563861 |
ttaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgca |
36563960 |
T |
|
| Q |
286 |
tatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgt |
385 |
Q |
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| T |
36563961 |
tatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgt |
36564060 |
T |
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| Q |
386 |
ggattctggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgatttcgaaggtggccgccctaccggacggttttgt |
485 |
Q |
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| T |
36564061 |
ggattctggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgacttcgaaggtggccgccctaccggacggttttgt |
36564160 |
T |
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| Q |
486 |
aacggtcgtactccaccggacttcatc |
512 |
Q |
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| T |
36564161 |
aacggtcgtactccaccggacttcatc |
36564187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 284 - 511
Target Start/End: Original strand, 36576588 - 36576815
Alignment:
| Q |
284 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttct |
383 |
Q |
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||||||||| | |||| ||||||||||||| ||||| ||||||||||||||||| | | ||||| ||||||||||||||||||| |||||||| || ||| |
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| T |
36576588 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaattatgtaccagcagtaattgtgtttggtgactcctct |
36576687 |
T |
|
| Q |
384 |
gtggattctggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgatttcgaaggtggccgccctaccggacggtttt |
483 |
Q |
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| T |
36576688 |
gttgattctggaaacaacaatatgatatcaacatttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgatttt |
36576787 |
T |
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| Q |
484 |
gtaacggtcgtactccaccggacttcat |
511 |
Q |
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| T |
36576788 |
caaacggccgtattccaccagatttcat |
36576815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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