View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0409_low_4 (Length: 556)
Name: NF0409_low_4
Description: NF0409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0409_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 26427878 - 26428378
Alignment:
| Q |
1 |
gttcatgatgttgaaaagtagtgatttctaagttgttggtagtttgaataggttgataagggtaacaattatggttgaagtatgtgctaagtgctcccat |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
26427878 |
gttcatgatgttgaaaagtagtgatttctgagttgttggtagtttgaataggttgataaggataacaattatagttgaagtatgtgctaagtgctcccat |
26427977 |
T |
|
| Q |
101 |
gttaacaaaaatacaaaatctgcaagnnnnnnnnnnnnnnnnnnnncataaatagggttagttaattaaagacaaataagtacaagaatgtttgaaagta |
200 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427978 |
gttaacaaaaatagggaatctgcaagaaaaaaaaaaa---------cataaatagggttagttaattaaagacaaataagtacaagaatgtttgaaagta |
26428068 |
T |
|
| Q |
201 |
gaaaatataggtagaaaatctagaaagtgagacctgacagtgtgctagaattaagaaagtatat----------------agaagaaatcttgtagatat |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26428069 |
gaaaatataggtagaaaatctagaaagtgagacctgacagtgtgctagaattaagaaagtatatagaagaaatcttctagagaagaaatcttgtagatat |
26428168 |
T |
|
| Q |
285 |
gtgtgaatccttgcaaggttttagggtttnnnnnnnnnnnnnnnnttgaagggtnnnnnnngactacgaatgaatttattttgagagagaaatgagaaaa |
384 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
26428169 |
gtgtgaatctttgcaaggttttagggttt----gagagagagagattgaagggtaaaaaaagactacgaatgactttattttgagagagaaatgagaaaa |
26428264 |
T |
|
| Q |
385 |
agaagtgtaaagtacactgttgttgttgagagagtatagctgtgatataaaactgatttcatcttcactgcctcatggtagtttgtgggatcagaaaatt |
484 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
26428265 |
agaagtgtaaagtacagtgttgttgtt--gagagtacagctatgatataaaactgatttcatcttcactgcctcatagtagtttgtgggttgagaaaatt |
26428362 |
T |
|
| Q |
485 |
aaggggaagtttgagg |
500 |
Q |
| |
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|||| ||||||||||| |
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| T |
26428363 |
aaggagaagtttgagg |
26428378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28009045 - 28008917
Alignment:
| Q |
1 |
gttcatgatgttgaaaagtagtgatttctaagttgtt---ggtagtttgaataggttgataagggtaacaattatggttgaagtatgtgctaagtgctcc |
97 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28009045 |
gttcatgatgttgaaaagtggtgatttctgagttgttattggtagtttgagtaggttgataagggtaacaattataattgaagtatgtgctaagtgctcc |
28008946 |
T |
|
| Q |
98 |
catgttaacaaaaatacaaaatctgcaag |
126 |
Q |
| |
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| T |
28008945 |
catgttaacaaaaaaacaaaatctgcaag |
28008917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 446
Target Start/End: Complemental strand, 28008715 - 28008623
Alignment:
| Q |
354 |
atgaatttattttgagagagaaatgagaaaaagaagtgt-aaagtacactgttgttgttgagagagtatagctgtg--atataaaactgatttcat |
446 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| || |||| || |||||||||||||||||| |
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|
| T |
28008715 |
atgactttattttgagagagaaatgagaaaaagaagtgtaaaagtaga---gtgttgttgagagaatacagctatgatatataaaactgatttcat |
28008623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 28008889 - 28008852
Alignment:
| Q |
157 |
gttagttaattaaagacaaataagtacaagaatgtttg |
194 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |
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|
| T |
28008889 |
gttagttaattaaagacaaacaagtacgagaatgtttg |
28008852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 42659977 - 42660020
Alignment:
| Q |
500 |
gggagcggattgtctcccgtgaagtttctctcatgtcttctcct |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
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| T |
42659977 |
gggagcggattgtctcccgtgaagtttctctccggtcttctcct |
42660020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 543
Target Start/End: Complemental strand, 42662447 - 42662404
Alignment:
| Q |
500 |
gggagcggattgtctcccgtgaagtttctctcatgtcttctcct |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42662447 |
gggagcggattgtctcccgtgaagtttctctccagtcttctcct |
42662404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 40396187 - 40396227
Alignment:
| Q |
503 |
agcggattgtctcccgtgaagtttctctcatgtcttctcct |
543 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
40396187 |
agcggattgtctcccgtgaagtttctctccagtcttctcct |
40396227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 31117841 - 31117884
Alignment:
| Q |
500 |
gggagcggattgtctcccgtgaagtttctctcatgtcttctcct |
543 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
31117841 |
gggagcggattgtctcctgtgaagtttctctccagtcttctcct |
31117884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Complemental strand, 14592146 - 14592101
Alignment:
| Q |
498 |
aggggagcggattgtctcccgtgaagtttctctcatgtcttctcct |
543 |
Q |
| |
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|||||||||||| |||||| |||||||||||||| |||||||||| |
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|
| T |
14592146 |
aggggagcggatcgtctccagtgaagtttctctccagtcttctcct |
14592101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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